ENST00000557736.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000557736.1 |
Source |
Gencode19 |
Same with |
lnc-RP11-80A15.1.1-2:1,NONHSAT036065 |
Classification |
overlapping(AS) |
Length |
636 nt |
Genomic location |
chr14+:25064929..25103698 |
Exon number |
3 |
Exons |
25064929..25065208,25092174..25092332,25103502..25103698 |
Genome context |
|
Sequence |
000001 AGTTCTTCCC CAGGCTGTGG AGTCTGCACA CTGGATTCAT GACCTCCCCC AAGTTCTGGC CAGGAAGCTT CTTGCCCAAT 000080
000081 TCAAATTGTT GCAAAGTTCA GCTGGAGATT TCCTTCTTCC TGTGGCATTT TCCTGTTGCT CCTCTGGCCA CCCTCCCAAT 000160 000161 GGATCCGTGT GGTCCCTGGC AGGAATGTCT TGCTTGGGGA CCGAGTGAGC TCTTAGAGCC TTTCTGCTGC TTCCTCTACC 000240 000241 CCTGTATTTT ACTCAGCTCT CTAAATTGAC TCAGTGCCAG GTCTGCTGCA GTTTGCTGGA GGTCCACTCC AGACTCTATG 000320 000321 TACCTGGATA TCACCAGCGG AAGCTGCAGA ATAGCAAAGA TTGCTTCCTG GTCCTTCCTC TGGAAGCTTC ATCCCAGAGG 000400 000401 GGCACTGGCC TGATGTCAGC TGGAGCTCTC CTGTATGAGA TTTTCTGTAA ATGCTGCCCA CCCCCACTGC CTCTGCCTGA 000480 000481 TGACGTCCTC TGGGTGCTTG TGTGAGAATC ATGCAGTGAC CACATCATCA CCCACAGCTG ATGACTCAGA GTGGACCACC 000560 000561 TATTCAGCCC AGAGCAGGAA CCCAAGCCTA TGAAGTGAAT TGTAGGATGT GGTATCAGCC AGTAGAGGTA CTGGAG |
Predicted Small Protein
Name | ENST00000557736.1_smProtein_38:268 |
Length | 77 |
Molecular weight | 8611.1026 |
Aromaticity | 0.157894736842 |
Instability index | 56.8065789474 |
Isoelectric point | 4.57110595703 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.0348235936472 |
Amino acid sequence | MTSPKFWPGSFLPNSNCCKVQLEISFFLWHFPVAPLATLPMDPCGPWQECLAWGPSELLE PFCCFLYPCILLSSLN |
Secondary structure | LLLLLLLLLLLLLLLLLLEEEEEEHHHEEELLLLLLLLLLLLLLLLHHHHHLLLLLLLLL LHHHLLLLLEEELLLL |
PRMN | - |
PiMo | - |