ENST00000557736.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000557736.1

Source

Gencode19

Same with

lnc-RP11-80A15.1.1-2:1,NONHSAT036065

Classification

overlapping(AS)

Length

636 nt

Genomic location

chr14+:25064929..25103698

Exon number

3

Exons

25064929..25065208,25092174..25092332,25103502..25103698

Genome context

Sequence
000001 AGTTCTTCCC CAGGCTGTGG AGTCTGCACA CTGGATTCAT GACCTCCCCC AAGTTCTGGC CAGGAAGCTT CTTGCCCAAT 000080
000081 TCAAATTGTT GCAAAGTTCA GCTGGAGATT TCCTTCTTCC TGTGGCATTT TCCTGTTGCT CCTCTGGCCA CCCTCCCAAT 000160
000161 GGATCCGTGT GGTCCCTGGC AGGAATGTCT TGCTTGGGGA CCGAGTGAGC TCTTAGAGCC TTTCTGCTGC TTCCTCTACC 000240
000241 CCTGTATTTT ACTCAGCTCT CTAAATTGAC TCAGTGCCAG GTCTGCTGCA GTTTGCTGGA GGTCCACTCC AGACTCTATG 000320
000321 TACCTGGATA TCACCAGCGG AAGCTGCAGA ATAGCAAAGA TTGCTTCCTG GTCCTTCCTC TGGAAGCTTC ATCCCAGAGG 000400
000401 GGCACTGGCC TGATGTCAGC TGGAGCTCTC CTGTATGAGA TTTTCTGTAA ATGCTGCCCA CCCCCACTGC CTCTGCCTGA 000480
000481 TGACGTCCTC TGGGTGCTTG TGTGAGAATC ATGCAGTGAC CACATCATCA CCCACAGCTG ATGACTCAGA GTGGACCACC 000560
000561 TATTCAGCCC AGAGCAGGAA CCCAAGCCTA TGAAGTGAAT TGTAGGATGT GGTATCAGCC AGTAGAGGTA CTGGAG
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Predicted Small Protein

Name ENST00000557736.1_smProtein_38:268
Length 77
Molecular weight 8611.1026
Aromaticity 0.157894736842
Instability index 56.8065789474
Isoelectric point 4.57110595703
Runs 11
Runs residual 0.00332728372656
Runs probability 0.0348235936472
Amino acid sequence MTSPKFWPGSFLPNSNCCKVQLEISFFLWHFPVAPLATLPMDPCGPWQECLAWGPSELLE
PFCCFLYPCILLSSLN
Secondary structure LLLLLLLLLLLLLLLLLLEEEEEEHHHEEELLLLLLLLLLLLLLLLHHHHHLLLLLLLLL
LHHHLLLLLEEELLLL
PRMN -
PiMo -