ENST00000557883.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000557883.2 |
Source |
Gencode19 |
Same with |
lnc-TMCO5A-1:8,NONHSAT041698 |
Classification |
intergenic |
Length |
766 nt |
Genomic location |
chr15+:38296947..38317219 |
Exon number |
3 |
Exons |
38296947..38297033,38312393..38312733,38316882..38317219 |
Genome context |
|
Sequence |
000001 GGTTAAGGGA GAAGTGATGG AGGCGATTCG AAGCTGTCTT TCCTACCCTC TTCAGTACCT CTTCCAGTGA TGTGAAGTTA 000080
000081 AAACCAGAGA TGGAGTCTCC CTGTGTTGCC CAGTCTGGTC TTGAGAGCTT CAGTTTTAAA TAATAAATTG TTCTCGTCTT 000160 000161 TCTAAATTTC AATCAAAACA CAGGATGTAT TTTAAAAGGG AAAAACTGTG AGGTAAAAGA ATAGGGTGAG GGGAGGAAAG 000240 000241 AAATAACTTC ATAGAGAAAA ATTCAATGAA CCCTTGGAAG AAAATATATG GAAGTATGGT TACTGACTTG GGAAAGAAGA 000320 000321 GAAAGGTACA ATGTAACTGC ACATAGAAGC CAGTCCTGAA AAGAAGCAAG CCGGCTGAAG TTATCTGCAA CTCAGAAGCA 000400 000401 CTTGGTACCA CCCAAGGGGA GATAAGAGGA GATCTCATCA GAGGTGCCTG AAAAGCACCT CAGCCGAAGG CCTCACATAG 000480 000481 AGAGACCTAA GAATGAAGGC ACCTGGACTA GGAATGTGAA TATGTGAAAG AACATGACCG GCCAGGGGCC CTGAGTTATT 000560 000561 GAATGCAACC CCCTTCAGAC ACTGCAACAC ACAGGCTGTG CACCAAGCCT AGTATGGGAA GGACAGCTTT TCTTCATGAG 000640 000641 GCCTGCCAGG TAAAGCCAGC TATGAAACAG GAAGTTGACC TTCACCAGAC ACTGAACCTA CTGGCACCTT GATCTTGGAC 000720 000721 TTCCCAGCCT TACAAACTGT AAGAAATAAA TGTCTGTTGT TCATAA |
Predicted Small Protein
Name | ENST00000557883.2_smProtein_287:358 |
Length | 24 |
Molecular weight | 2948.2777 |
Aromaticity | 0.130434782609 |
Instability index | 69.2217391304 |
Isoelectric point | 8.51373291016 |
Runs | 5 |
Runs residual | 0.0103519668737 |
Runs probability | 0.0462462462463 |
Amino acid sequence | MEVWLLTWERRERYNVTAHRSQS |
Secondary structure | LEEEEELHHHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |