ENST00000557883.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000557883.2

Source

Gencode19

Same with

lnc-TMCO5A-1:8,NONHSAT041698

Classification

intergenic

Length

766 nt

Genomic location

chr15+:38296947..38317219

Exon number

3

Exons

38296947..38297033,38312393..38312733,38316882..38317219

Genome context

Sequence
000001 GGTTAAGGGA GAAGTGATGG AGGCGATTCG AAGCTGTCTT TCCTACCCTC TTCAGTACCT CTTCCAGTGA TGTGAAGTTA 000080
000081 AAACCAGAGA TGGAGTCTCC CTGTGTTGCC CAGTCTGGTC TTGAGAGCTT CAGTTTTAAA TAATAAATTG TTCTCGTCTT 000160
000161 TCTAAATTTC AATCAAAACA CAGGATGTAT TTTAAAAGGG AAAAACTGTG AGGTAAAAGA ATAGGGTGAG GGGAGGAAAG 000240
000241 AAATAACTTC ATAGAGAAAA ATTCAATGAA CCCTTGGAAG AAAATATATG GAAGTATGGT TACTGACTTG GGAAAGAAGA 000320
000321 GAAAGGTACA ATGTAACTGC ACATAGAAGC CAGTCCTGAA AAGAAGCAAG CCGGCTGAAG TTATCTGCAA CTCAGAAGCA 000400
000401 CTTGGTACCA CCCAAGGGGA GATAAGAGGA GATCTCATCA GAGGTGCCTG AAAAGCACCT CAGCCGAAGG CCTCACATAG 000480
000481 AGAGACCTAA GAATGAAGGC ACCTGGACTA GGAATGTGAA TATGTGAAAG AACATGACCG GCCAGGGGCC CTGAGTTATT 000560
000561 GAATGCAACC CCCTTCAGAC ACTGCAACAC ACAGGCTGTG CACCAAGCCT AGTATGGGAA GGACAGCTTT TCTTCATGAG 000640
000641 GCCTGCCAGG TAAAGCCAGC TATGAAACAG GAAGTTGACC TTCACCAGAC ACTGAACCTA CTGGCACCTT GATCTTGGAC 000720
000721 TTCCCAGCCT TACAAACTGT AAGAAATAAA TGTCTGTTGT TCATAA
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Predicted Small Protein

Name ENST00000557883.2_smProtein_287:358
Length 24
Molecular weight 2948.2777
Aromaticity 0.130434782609
Instability index 69.2217391304
Isoelectric point 8.51373291016
Runs 5
Runs residual 0.0103519668737
Runs probability 0.0462462462463
Amino acid sequence MEVWLLTWERRERYNVTAHRSQS
Secondary structure LEEEEELHHHHHHLLLLLLLLLL
PRMN -
PiMo -