ENST00000557900.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000557900.1

Source

Gencode19

Same with

lnc-TLN2-1:1

Classification

intergenic

Length

1225 nt

Genomic location

chr15+:63188011..63191742

Exon number

2

Exons

63188011..63188342,63190850..63191742

Genome context

Sequence
000001 CTGTGTGGTG CTGGGTGTGA GTCGGAGCTA GCCTGGGTTT ACCTGAGTTG CAGGGTCACC CCTCATCGCA CCCTTGTCAG 000080
000081 TCCTCAAATA GGGGTGCAAC TGTTCCATGA AAGGGAACAA AGAGACTGAG CTACTAGACA CCAAGCTGTT TAGGACTGAA 000160
000161 CCCATTCCTG TCCAAACGGA AGTGATCCAG AGGGACTCTG AATATTACAG AAGTCAAGAG ATTTCATCAT CTTTATTCAA 000240
000241 AGAAAGGGGT TTGTTTGTTG ATTTTTTGGA TTTTTTTTTT GGACCACAGC TCTATCTACT CCCTGAAGAG TAAGGATTAT 000320
000321 TAAGTAAATC AGATGGAAAA AGAATCGCAA ATAAGCATAA TGTGAAGAGC ATGAGCTTTG GAATAAGCAA GCCTGGAATT 000400
000401 ACAATTTTCT TTTATTAGCT CTGTGGCTGT AATACTCAAC TTTTGCAAGC TTCAGTTTCC TCGTCTGTGA AATGGAATAA 000480
000481 TAGCACTTAC CTCATTGGCT GTTGTATGGA TTAAATGAGA CCATGACTAT GGATGTATGG CATTTGGTAC CCAATAACCC 000560
000561 CTCAATAATC GGCAGCTATA ATTATTCATA ATAATAATGG TGGTAGCAAC AAACCCAGCC CAAACATCTG AAGGACCGAT 000640
000641 CACTAAAAAG AAGATGAACT CAGTCCTACG TAGTAACAAG AATGTGACAT CTATGTTGTT GCCAAAAGTC TGGAGGAGTT 000720
000721 GCCAGGACCA GAGAGAAGGA GGTGGTGAGG CCGGCCTGGA AGAGGGAGGG GACAGATGTC AAGGACCCCA ATCTTGAGGT 000800
000801 GGAAAGTTCT GTGATTAACC CAGATGAATG TCTCTAACCT CCAACTCTTC TGTTCTCAGA GTTTTAATGG GGCACACCGT 000880
000881 GTGCTGGGCA TTGACATAGA TGGGAAAAGC ATGACCTAAA ATAAGGGCTG GAAGCCAAGA CTGGGAGGAA GGGCAAAGGG 000960
000961 AGCAGGCAGC CTGGCACCAG GTACCAGTGA GGTGTCTGCT CTTTGTCCCC ATCACCTGTC AGCTAAGGAA TTCTGCATGT 001040
001041 CATCAGTGCA ATAAAATGTG ATCGCCAGAG TGAAAACCTT GTAATAGACC AGCTGTGGCT TCTCTCAACA CCAGTATGTC 001120
001121 CAAGGAGGAT GCATTTTTAT TGCTTTTGTG GTCTTAACAA AAAAGATTCA TGAGCATTGT ATAAAAGGCA TATTAAAACA 001200
001201 ATTCGGTAAA AGGATGAAAG AAAAA
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Predicted Small Protein

Name ENST00000557900.1_smProtein_596:796
Length 67
Molecular weight 7088.9318
Aromaticity 0.0151515151515
Instability index 61.4893939394
Isoelectric point 8.76727294922
Runs 12
Runs residual 0.0312103066594
Runs probability 0.0334893717247
Amino acid sequence MVVATNPAQTSEGPITKKKMNSVLRSNKNVTSMLLPKVWRSCQDQREGGGEAGLEEGGDR
CQGPQS
Secondary structure LEEEELLLLLLLLLEELLHHHHEEELLLLEEEEELLHHHHHHHHLLLLLLLLLLLLLLLL
LLLLLL
PRMN -
PiMo -