ENST00000558175.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000558175.1 |
Source |
Gencode19 |
Same with |
lnc-JAG1-5:8 |
Classification |
intergenic |
Length |
696 nt |
Genomic location |
chr20-:11781111..11791074 |
Exon number |
2 |
Exons |
11781111..11781559,11790828..11791074 |
Genome context |
|
Sequence |
000001 TGTGCTGAGG ACTACATCAG TCTCCTGCAA TTATCATCTA CACTGAAAAA CAAAGAGGAC AGAGGCGAAG CTAGTGGCCC 000080
000081 TCACCATCCC CTGCAAGCTG ATTGCTTCTT ACTGCAAGCA CTTGAGCATC TTCCTGAGAG CTTTCTTGGG CAATGGGAAC 000160 000161 CAGGCTTGGC CCAATCACAG GCAGGTGAAG TATGAGGAAA TGGAGAAGGC ATTGTCCAAG GAGCAGTCTT CAACCTTCAC 000240 000241 CCCGCAAACG GAATCTCACT CTGTCTCCCA GGCTGGAGTG CAGTGGTGCG ATCTCGGCTC ACCGCAATCT CCGCCTCTCG 000320 000321 GGTTCACGCC ATTCTCCTGC CTCAACCTCC AGAGCAGCTG GGACTACAGG TTCCTGCCAC CACGCCCGGC TAATTCTTTG 000400 000401 TATTTTTAGT AGAGACGGGG TTTCACCGTG TTAGCCAGGA TGGTCTAGAT CTCCTGACCT CGTTATTTGC CTGCCTGGGC 000480 000481 CTCCCAAAAT GCTGGGATTA CAGGCGTAAG CCATCACACC CAGCCGGCAC AGTGCTTTTA AGCATATGGT TGATCCATAT 000560 000561 GGTGGCAGTG TCATTACTTA ATTTTTTTAA TAGTTGAATA ATATTCCATT GTGTGGATAT ATAACATTTA AAAAATCAAT 000640 000641 TTATAAATTG ATGGACATTT GGATTATTTC CACTTTTTGG CTATTGTAAA TAATGG |
Predicted Small Protein
Name | ENST00000558175.1_smProtein_191:433 |
Length | 81 |
Molecular weight | 8833.078 |
Aromaticity | 0.025 |
Instability index | 89.3075 |
Isoelectric point | 11.8013305664 |
Runs | 8 |
Runs residual | 0.0388157894737 |
Runs probability | 0.0486442324678 |
Amino acid sequence | MRKWRRHCPRSSLQPSPRKRNLTLSPRLECSGAISAHRNLRLSGSRHSPASTSRAAGTTG SCHHARLILCIFSRDGVSPC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLHHHHHLLLLLLLLLLLLLLLLLLLLLL LHHHHEEEEEEEELLLLLLL |
PRMN | - |
PiMo | - |