ENST00000558389.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000558389.1 |
Source |
Gencode19 |
Same with |
lnc-GABARAPL3-3:1,NONHSAT048401 |
Classification |
intronic(AS) |
Length |
474 nt |
Genomic location |
chr15-:91139072..91139679 |
Exon number |
2 |
Exons |
91139072..91139432,91139567..91139679 |
Genome context |
|
Sequence |
000001 TTAGGAGTTG ACTAGCTTTG CTTATGCTCT CAAGTTGATC CATACAGTGC CAGATTATAC CCTATCATAA GAGATAGGGT 000080
000081 CCCCTGAACA CAAGAAGTCA TCTCCCCTTC TGGGACTGTG AACTCAAGAA AGCAGGAAGT ATGCCTCCCT TATTCATCAC 000160 000161 TGGGTCCCCA GTGCTTAGAA CAGTGCCTGG CACAGAGACG GGGCTCTGTA AAGATCTGCT GAATGAACAC TTTATCCTCT 000240 000241 TACTTCTTAT CCTTCAAGCC TCAGATGTTC CCCCAGGATG CCTTCTTCGT TTCCCCAGAC TAGTTCAAGC TGCACCTCCG 000320 000321 ACGTGCTCCC ACAGCCCCTG AGCTGCCTCC CTGCAGACGC CATACCTGCC GTGGCTGCTT GTTTGCTGAG TAGCCTCTCC 000400 000401 CACTGAACCC TGGGCAACTT GAGGTCAGGG ACCATGCTGT TTACTGTTAC AGTGAATTAA AATGTCTAAA ACGG |
Predicted Small Protein
Name | ENST00000558389.1_smProtein_140:340 |
Length | 67 |
Molecular weight | 7103.3984 |
Aromaticity | 0.0454545454545 |
Instability index | 67.9 |
Isoelectric point | 6.68939208984 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0362813794186 |
Amino acid sequence | MPPLFITGSPVLRTVPGTETGLCKDLLNEHFILLLLILQASDVPPGCLLRFPRLVQAAPP TCSHSP |
Secondary structure | LLLEEELLLLEEELLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHLLLL LLLLLL |
PRMN | - |
PiMo | - |