ENST00000561559.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000561559.1 |
Source |
Gencode19 |
Same with |
lnc-SERTAD2-1:2 |
Classification |
intergenic |
Length |
1907 nt |
Genomic location |
chr2-:64749321..64751227 |
Exon number |
1 |
Exons |
64749321..64751227 |
Genome context |
|
Sequence |
000001 TTCCCGCACT CAGGCGCCGG TTGAGGCTGC GCTCCTGGCG AAGGACAGGT GCTCCTTTCA GCCGGTTAAC GTTCAGCTCA 000080
000081 AGACCGGATT AAGTCTCTTG CTCTCCAAAT AAAATTGTAA AGGTTTGGAA ATATAGAACC ACATTTTTAC CAAAAACCTA 000160 000161 CTAGAGAGCA TTCGTCAGCT TGCCCTTTTC GCCCCGAAAA ACGACTTTTT CATTCACAGC CTGTCTCTTC CTCTTTTTAA 000240 000241 ATTTATGCCG ACAGAGGAAG AAGCTGATAT TTAACAAATA ACAAGAGGTT GCGATAAATA GAATTTAAGG TGGGAAAGCA 000320 000321 GCCGCCAAAC TGACAAATCG TCTTCGAGAC CGACAAGAAA ATAGTAGTCC GGAATTTGGC TAATGGATGG AGAAGGTGGT 000400 000401 CGTTTTTCAT AGACCCTTAC GGAGAATATC TAGTGAAGCT AAAGAGATCA CCATAAACTT ATGCATTCAA ACGCATTTCT 000480 000481 GGAACAGAGG TCGTAACCGA TTTTGTTTCC ATCATCAGTC CTGAACAGTT GATTATTTAT ATAATCAACT GTTATTTATA 000560 000561 TAAAGGTAAT AAAAATATTA CCTTTCCTCC TCCTTTACAA TGAATATCTG TTAGAACACC TGCCAGTGTA ACAATCAGAC 000640 000641 TACAAGGCTA CAGGATTATG ATTACTGTCT CGGATGATGA GCCCGGGGTC CTACAAATCA TGACCCCCGC CGGCCCCTCA 000720 000721 TTCTGCCCAT ATTTGCCAAA CGTCTGCATC AGTAATTTGA ATAATTTAAA ATAGTTCCAA AACAGCAAAG CTCAGCAGTT 000800 000801 ACGCAAAGAA ACAAGAATGG AAAACATCCC CTCAGGCACA GAGAAGTGTC CACCCCTTTG GGTGGAGGAA TTATACAAAT 000880 000881 CAGGAGAAAG ATAAGGACAA TAGCAGTTCA TCACGATTTA TCCCGCCTCT GCAATGTTCT AGACAAATTA ACTCGGAGCG 000960 000961 CTCCAATGGA CCCGCATTTG TCTCTTTACT ATTCAATCGC TGTAAGATAT ACGGAGACTG CATCACTTTA AATGGGAGTA 001040 001041 TCAATTGCTT TGTGGTTATG CTGGATTTTG TGTTATTGCT CAGTCACTAA AGTAAGAAAA ATCTATATGG CTTGTCAAAT 001120 001121 TTATGCCTAT TGTATTTCGC CCCCTGCTGG TTTAGCTCGT GTGCAAGCTT GAATTTGTGT GTGTGTAGAA ACTAGAAATT 001200 001201 GATTTTAAAC GAACACATGC TTGTTTTCAT TTTACAGCTC TACTAAACAG AAATATCAAA ATAAGAACAT ATGACTAGAC 001280 001281 CTTAAAGCAG ACCCTACACT AAGAACATGT TTAAACTAAA TGAATTTAAA CTGCACTCCA GCCTGCGCGA CAGAGTGAAA 001360 001361 CCCTGTCTAA AAAAAAATTA AATTAAATTG CACACCCCCC ATCAGCTTAC AATTTTGTAA TAGGGAAATT GAGTACCTAT 001440 001441 TTGGCCAACT AACTTGTAAT TGGTAATCTT ACATGTAATT CCGAAGACAG TGCCCTAATG CTCATGACAT TTTATTACAA 001520 001521 AGGGAAAGTA TTTGAGTGTT TTTAAGGTGA TAAATCTGTG GGAAATATAA AGTCCATTTC ATTTGGAGTC AATGATAGTA 001600 001601 TTGTTTTTAT TTACCTTTTA AAAATTATGG CCATAACTGC ATTACCTAAG ATTTGGCATC AAGAAAAGAA GAAGAAAAAA 001680 001681 ATTACCAGTT AACATTTGTT GTATTTACTT CTAGTTTTTT TTTCCTGTGC GTACTTTTTA CAAACTTGTA ATCATAATTT 001760 001761 AAGTAGATTT TGTGTCCCTT TTGTGTTGTA AGCATTTCCA CCCATCGTTT AATGTAAAAC CTTAATTTTA ATTGGCTGCT 001840 001841 TAGTAGTCAA TGGAATGACC ACTATATGGA TAGTTTTCAG TATTATAAAA TAATACTTAG ATGAACA |
Predicted Small Protein
Name | ENST00000561559.1_smProtein_1031:1171 |
Length | 47 |
Molecular weight | 5158.2874 |
Aromaticity | 0.130434782609 |
Instability index | 64.6326086957 |
Isoelectric point | 8.99066162109 |
Runs | 8 |
Runs residual | 0.0125517598344 |
Runs probability | 0.0178413707825 |
Amino acid sequence | MGVSIALWLCWILCYCSVTKVRKIYMACQIYAYCISPPAGLARVQA |
Secondary structure | LLHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHEELLLHHHHLLLL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | TTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooo |