ENST00000561559.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000561559.1

Source

Gencode19

Same with

lnc-SERTAD2-1:2

Classification

intergenic

Length

1907 nt

Genomic location

chr2-:64749321..64751227

Exon number

1

Exons

64749321..64751227

Genome context

Sequence
000001 TTCCCGCACT CAGGCGCCGG TTGAGGCTGC GCTCCTGGCG AAGGACAGGT GCTCCTTTCA GCCGGTTAAC GTTCAGCTCA 000080
000081 AGACCGGATT AAGTCTCTTG CTCTCCAAAT AAAATTGTAA AGGTTTGGAA ATATAGAACC ACATTTTTAC CAAAAACCTA 000160
000161 CTAGAGAGCA TTCGTCAGCT TGCCCTTTTC GCCCCGAAAA ACGACTTTTT CATTCACAGC CTGTCTCTTC CTCTTTTTAA 000240
000241 ATTTATGCCG ACAGAGGAAG AAGCTGATAT TTAACAAATA ACAAGAGGTT GCGATAAATA GAATTTAAGG TGGGAAAGCA 000320
000321 GCCGCCAAAC TGACAAATCG TCTTCGAGAC CGACAAGAAA ATAGTAGTCC GGAATTTGGC TAATGGATGG AGAAGGTGGT 000400
000401 CGTTTTTCAT AGACCCTTAC GGAGAATATC TAGTGAAGCT AAAGAGATCA CCATAAACTT ATGCATTCAA ACGCATTTCT 000480
000481 GGAACAGAGG TCGTAACCGA TTTTGTTTCC ATCATCAGTC CTGAACAGTT GATTATTTAT ATAATCAACT GTTATTTATA 000560
000561 TAAAGGTAAT AAAAATATTA CCTTTCCTCC TCCTTTACAA TGAATATCTG TTAGAACACC TGCCAGTGTA ACAATCAGAC 000640
000641 TACAAGGCTA CAGGATTATG ATTACTGTCT CGGATGATGA GCCCGGGGTC CTACAAATCA TGACCCCCGC CGGCCCCTCA 000720
000721 TTCTGCCCAT ATTTGCCAAA CGTCTGCATC AGTAATTTGA ATAATTTAAA ATAGTTCCAA AACAGCAAAG CTCAGCAGTT 000800
000801 ACGCAAAGAA ACAAGAATGG AAAACATCCC CTCAGGCACA GAGAAGTGTC CACCCCTTTG GGTGGAGGAA TTATACAAAT 000880
000881 CAGGAGAAAG ATAAGGACAA TAGCAGTTCA TCACGATTTA TCCCGCCTCT GCAATGTTCT AGACAAATTA ACTCGGAGCG 000960
000961 CTCCAATGGA CCCGCATTTG TCTCTTTACT ATTCAATCGC TGTAAGATAT ACGGAGACTG CATCACTTTA AATGGGAGTA 001040
001041 TCAATTGCTT TGTGGTTATG CTGGATTTTG TGTTATTGCT CAGTCACTAA AGTAAGAAAA ATCTATATGG CTTGTCAAAT 001120
001121 TTATGCCTAT TGTATTTCGC CCCCTGCTGG TTTAGCTCGT GTGCAAGCTT GAATTTGTGT GTGTGTAGAA ACTAGAAATT 001200
001201 GATTTTAAAC GAACACATGC TTGTTTTCAT TTTACAGCTC TACTAAACAG AAATATCAAA ATAAGAACAT ATGACTAGAC 001280
001281 CTTAAAGCAG ACCCTACACT AAGAACATGT TTAAACTAAA TGAATTTAAA CTGCACTCCA GCCTGCGCGA CAGAGTGAAA 001360
001361 CCCTGTCTAA AAAAAAATTA AATTAAATTG CACACCCCCC ATCAGCTTAC AATTTTGTAA TAGGGAAATT GAGTACCTAT 001440
001441 TTGGCCAACT AACTTGTAAT TGGTAATCTT ACATGTAATT CCGAAGACAG TGCCCTAATG CTCATGACAT TTTATTACAA 001520
001521 AGGGAAAGTA TTTGAGTGTT TTTAAGGTGA TAAATCTGTG GGAAATATAA AGTCCATTTC ATTTGGAGTC AATGATAGTA 001600
001601 TTGTTTTTAT TTACCTTTTA AAAATTATGG CCATAACTGC ATTACCTAAG ATTTGGCATC AAGAAAAGAA GAAGAAAAAA 001680
001681 ATTACCAGTT AACATTTGTT GTATTTACTT CTAGTTTTTT TTTCCTGTGC GTACTTTTTA CAAACTTGTA ATCATAATTT 001760
001761 AAGTAGATTT TGTGTCCCTT TTGTGTTGTA AGCATTTCCA CCCATCGTTT AATGTAAAAC CTTAATTTTA ATTGGCTGCT 001840
001841 TAGTAGTCAA TGGAATGACC ACTATATGGA TAGTTTTCAG TATTATAAAA TAATACTTAG ATGAACA
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Predicted Small Protein

Name ENST00000561559.1_smProtein_1031:1171
Length 47
Molecular weight 5158.2874
Aromaticity 0.130434782609
Instability index 64.6326086957
Isoelectric point 8.99066162109
Runs 8
Runs residual 0.0125517598344
Runs probability 0.0178413707825
Amino acid sequence MGVSIALWLCWILCYCSVTKVRKIYMACQIYAYCISPPAGLARVQA
Secondary structure LLHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHEELLLHHHHLLLL
PRMN LLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLL
PiMo TTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooo