ENST00000561571.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000561571.1 |
Source |
Gencode19 |
Same with |
lnc-CT62-1:2,NONHSAT047031 |
Classification |
antisense |
Length |
554 nt |
Genomic location |
chr15-:71439989..71481368 |
Exon number |
5 |
Exons |
71439989..71440129,71464491..71464496,71475445..71475555,71477764..71477845,71481155..71481368 |
Genome context |
|
Sequence |
000001 AAAAAAGGAA GGAAGAAAGG AGGAAGAGGC AGGCACAAGA CAAAATGAAT CTCTCCGCTG TGCACATGGA GCCTTAGCTC 000080
000081 TGATTCCAGT TGAGCAAAAT TATGAAGAAG ATGATTCCCC ATATGGATGA CAGATAAACA CCCTGTGGCG AGTCACTCAC 000160 000161 TCCCGAAAGG CCCTCTGAAG GATCGCGCAT GTCCTGACTG CACAGCCTGC TCCTGACAAT GCTCTCAAAG CCACGGTTGT 000240 000241 AATAGAAATT GGAAAATCAA AGCAGATCCA TGTGGCCTCA GCATAACGAA AACAAGATGG GATTTCCCCT CCACAAGCAC 000320 000321 TCTCTTGCCT GCCGCCATGT AAGGCATTCC TTCGCTCCTG CTTTGCCTTC CGCCATGATT GGGAGGCCTC CCCAACCATG 000400 000401 TGGAACTAGA CGGGGTTTCA TCATGTTGCC CAGCCTAGCC TTGAACTCCT CGGCTCAAGT GAACTGCCTG CCTCGGCCTC 000480 000481 CCAAAGTGCT GGGACTACAG TGAGCCACCT TTCTGGCCTA CACAGCACAG CTTTTAAAGA CACAACACGC TTTG |
Predicted Small Protein
Name | ENST00000561571.1_smProtein_269:502 |
Length | 78 |
Molecular weight | 8531.0135 |
Aromaticity | 0.0519480519481 |
Instability index | 81.6142857143 |
Isoelectric point | 11.368347168 |
Runs | 8 |
Runs residual | 0.0321852060982 |
Runs probability | 0.0369413531179 |
Amino acid sequence | MWPQHNENKMGFPLHKHSLACRHVRHSFAPALPSAMIGRPPQPCGTRRGFIMLPSLALNS SAQVNCLPRPPKVLGLQ |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLEEEEEHHHLLLL LLEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |