ENST00000562077.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000562077.1

Source

Gencode19

Same with

lnc-AARS-1:1,NONHSAT143422

Classification

intergenic

Length

1471 nt

Genomic location

chr16-:70349543..70380650

Exon number

5

Exons

70349543..70350045,70351159..70351276,70367723..70367863,70375843..70376002,70380102..70380650

Genome context

Sequence
000001 CGGCCTCCTC GCTTCTTAAA ATGTCTGAGC TCTACGAAGT GGAACTGTTA GCCCTCCGTT TATTGCCTTA CTTCACACTG 000080
000081 AAATAAGCCA ACGTTTATTT TATTTTATTT ATTTTATTAT TTATTTTATT ATTTTTTTTC GAGACGGAGT CTCGCTCTGT 000160
000161 CCCAGGCTGG AGTGCCGTGG CGGGATCTCG ACTCACTGCA ACCTCCGCCT CCGTGTTCAA GCTATTCTAC CTCAGCCTCC 000240
000241 CGAGTAGCTG GGATTACAGG TGCCCGCCAC CACGCCCGGC TAATTTTTGT ATTTTTAGTA GAGATGGGGT TTCACCATGT 000320
000321 TGGCCAGGCT GATCTCGAAC TGCTGACCTT GTGATCCTCC CGCCTCAGCC TCCCAAAGTG TTGGGATTAC AGGCGTGAGC 000400
000401 CACCGCGCCC GGCCCCCAAC GTTTCTTTTT AAGCCTGTCA TATCTCACAT TAAATGTGTA AGTCTCTGAA CTGTAGGGCT 000480
000481 TTGAACAAAG GAAAGTTCCA TGAGAATACT ATATGATGCC AATTTCTACT GTTAGGAACG CGATAACAGA GTGCAGTGGG 000560
000561 GGAGAAAATA CCGTCCTCAA GATCTGAGAA ACTGGAGAGG AAAAGTCACA GGACAACCAA CTTCTCTATG ACATAGCCCA 000640
000641 GCATCTGAGG AAAGTCCTGC AATAGTGGAG GTGGAGCAGA GGGTATGAGC TGGGAAGCAA ATGGAGCAGG AGCTGGAGGC 000720
000721 TGCCCCATCC ACTCCAAGCC AGAGAACAAG CAGAGGCTGC CACAGGAGAT CCTGGGCAAG TAATCAGCCA CAGCATCTAG 000800
000801 ATTAGCATGA AGGAAACACT GGCCAAATTA AAAGATGAAA CTTCCAAAAG AGTCTCGATC TATTGCCCAG GCTGCAGTGC 000880
000881 AAAGGTGCAG TCTCGGCTCA CTGCAACATC CACCTTCCGG GTTCAAGCAA TTCTCGTGCC TCAGCCTCGC GAATAGCTGG 000960
000961 GATTACAGTG CAAAGGGGAA GAGTCAGAAG GTGAATAAAT ACTCACAGCC GAAGCTCTTC AAAAGACTTC ACCGAGTACA 001040
001041 GAGGGGAGTT TGGATCCCGC TGCAGGACTT CCACTTGGTT TGTGTTATCA ACAAGGTTGC TTCTGATCAG CTTGTTGAGT 001120
001121 AAGGACTGGG CAGCTCTGTC CTCTGTCAGG AAAAAGAAAG CAAAGAATTT TAAAAAGTCC TTGAAACCTA CCAGGCGTTT 001200
001201 ACTCTAATTC AACTGCCATT TGTATTTTAA ATAATAATGT ACTGAACATT CAAATTCAAG GTACGTCATA GTTTTGACTT 001280
001281 ATAAATTAAA ATAGTTTTAT TAAAGAAAAA AGTTATGATA CATCACCCAT TTAGGCCTCA TATTCTTTTC CAGACTCTAT 001360
001361 TCTAACAGCC CTCTTTTCCT GCAGTTATCT ATTCCTCCTA TCCAGACCCA CATATTTACT CCCCAATTTG TACTATATAT 001440
001441 AAACCTAAAG TAATTAATGT AGCAATCACA A
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Predicted Small Protein

Name ENST00000562077.1_smProtein_806:955
Length 50
Molecular weight 5467.3495
Aromaticity 0.0408163265306
Instability index 44.7816326531
Isoelectric point 9.78167724609
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0324736501207
Amino acid sequence MKETLAKLKDETSKRVSIYCPGCSAKVQSRLTATSTFRVQAILVPQPRE
Secondary structure LHHHHHHHHHHLLLLEEEELLLLLLEEEEEEEELLEEEEEEEEEELLLL
PRMN -
PiMo -