ENST00000562143.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000562143.1 |
Source |
Gencode19 |
Same with |
lnc-RP1L1-4:1 |
Classification |
intergenic |
Length |
3770 nt |
Genomic location |
chr8-:9907995..9911764 |
Exon number |
1 |
Exons |
9907995..9911764 |
Genome context |
|
Sequence |
000001 GGACGAAGTT CTCGGACAGA GAACAAGTGC GCTCCTGTCG TACGAAGTAC GTGAAGCTGC AGAGGCCAAA AAACACGCCG 000080
000081 AGCCCTTGGG GATGCGGTTT GATTTTAAAG TTGCTGCCGT GTCGCCCCGA CTTCGCAGTT TAGCAGTGCC CAGTAAGATA 000160 000161 GAAGAGGACC TGCCTTGCAG CCAGCTAGAC TGTCAGTTTT TATTGGAGAC ATTGTCATGA CGGCCATCAG AAGGGTTGCT 000240 000241 ATTCGTCCAA AGTGAAAACT AAGCACAGTT CTCAAAATGC GCGGAATAGG GAAGATGAAT TCAATATTAA GTTATGTATT 000320 000321 TACAAACATA TTTAAGCCCA TTTTGCAGCG GCCAAAATAC GGGAGCAAGG CACCAACAGC ACCATTAAGG CAGTGTAGGT 000400 000401 GGACTTAATG GTGGTGTTGT ATTATTCTTG TTTCTCAAAT CATAGGAGAT GACATTTGTT CCTGTGACAT TCTCAAACTA 000480 000481 AATGTAAAGT GGTTGGAGCG AGGTGAGTGA CTTGGGAGTT CATCTGTGTG AGATTTTGGC TTAACACATG TTCTGCCAAA 000560 000561 ATGGGCAGGT CGTCTCAGAT GAGGGAGGGA ACTTCAGATT AGCACCCACA GAAAGGAGGC TTTCACCCAG CTTCTTGCAT 000640 000641 GGATTTAGTT ACCACTTTGT TTTCATGTGG TCTGGACTGT AAGGAGGGCA GGAGGCTTAG CAGTGCTATA GTGTAGAATG 000720 000721 AGGTGTGTTG CCAGGCATAC AACACTAAAA AGGCTCTAGC TTTGATTTTG TAATTTGTAT TTCCCCTGGA CAAAATGATA 000800 000801 CCTAAACTGT TTGTTATTGC TATGAGGCTA TACCAAGTCG GTTCCACAGG CCTTTCATGA AAACACCCCC AGGAGTCCCT 000880 000881 TCTAGGCTTG CGAAGGCCTG GTCACTATTA AGGGTCTGAA AAAATAGTCA TTCTGTCAAA GACAATATTT TGTGTTTTTC 000960 000961 AGTTACTTCT TTTTGATACA TACTGATTTG TCTGTGTTTT GTGGTTGATT GTATGAAGTT TCACATGCTA GAAATACTCT 001040 001041 GCAACTAAGA GCTGAAGAAT GTTTAGTGTG AAGAAATAAC TTACTTGGCA TGATGGCTCA CTCCTGTAAT CCCAACACTT 001120 001121 TGAGAGGCTG AGGCAGGAGG ATTGCTGGAG GCCAGGAGTT TGAGACGCCA TCTTTACCAA AAAAAAAAAA AAAAAAGGTA 001200 001201 TTTAAGTAGT TGGGCATGGT GGTGTGGTAG CGCACACCTG TGGTCCCAAC TACTTGGGAG GCTGCACCAG GAGGAACGCT 001280 001281 GGAGCCAGAG AGGTAGAGGC TGCAGTGAGC TATGATCACA CTGCTGTGCT CCAGCCCGGG CAACAGAGCA AGACCTTGTC 001360 001361 TCAAAAAAAA AAAATTAATT TTGATGTTAA ATGAAAAAGT AAAACAAATG CAGTGTGCGT GTATACATGT AGTATATATG 001440 001441 AAAATGCATG TACTCCCAGT TGCACAGCCA CTGAACAATT CGAAAAAAAT GCAATTTTTT TTGTTCAGAA TAGTGGGATT 001520 001521 CTACTGCTTT TCATTGTCTT TAAACTGTTT TAAGTGTTCT GTATTGTTAC AACGTTCTCG AGTATTCCAA TGGCTGTTAC 001600 001601 TTTTATAATT ATAAAAGAAT AAGCATTTTT AAAGAACAGA TATATCTTAT TTCAAAAACA AGGGTTTTTC GTTTACCAGA 001680 001681 ATAGCTGCAA GAAAAGTTAT ATTAGTTTCT TTGGTGTTTT GAGGAAAGAA TTGAACATTT TTGCCTTCAG TGGTGCCTTT 001760 001761 TTCACCACTA GGACTTCCTT TTCTTCAGAC ATTCCCCCTA ATCCAGCGGT CCCCCACCTT TTTGGCACCG TGGACGAGTT 001840 001841 TCGTGGAAGA CAGTTTTTTT CCACAGATGG GGAAGGGGAG ATGGGGGATG GTTTCGGGGT GAAACTGTTC CACCTCAGAT 001920 001921 CATCAGGCAT TAGTTAGCTT CTCATGAGGT GTGTGCAGCC TAGATCCCTC ACATGCACAG TTCACGATAG GGTTTGTCCT 002000 002001 CTGATGAGAA TCTAATGTCG CTGTTGATCT GACAGCCACA TCTAACTTGG GAAGGTGGGA GATGAGGTTC TCTTGCGGAG 002080 002081 TGACTATAGA TACAACTAAT ACTTGGATAT TTGGCAGTTC TAATAATAAA ACAGGAATGT TCTTTGGACA ACTGTGACAC 002160 002161 AATCTACTCC TCTGGCCCCT CAAATATCCA TGGATACCCT TGTGACACAT AGAACACACC CTGTTTGAAG AGAGAAAACC 002240 002241 CAGCATTCTA AGCAGTTACT GCATCCAGCT CAGCGTCCAT GATCTAAAGA TGTAACAGTC CCTTACAAGT CTGATATAAC 002320 002321 TCCTCATGGT CCAATGACCT ACAGAGTAAA TTATGTTATT TATTCCCCTT TCTCTTCCCC ACACAGCCAG TATGCAGTGG 002400 002401 TGAAGTAGGG CACGAAAACT AATTTGGAAG AAGAGTGAGG ACAAAATAGT AGTTCTTTGT CTAAGCGAAT GTGAAGAGCA 002480 002481 GATTAGACTA CAAAGGTAAT GAAGTAAATT CTTGGTTAGA CCCCAGTTCT GTTTTCCAGG AGGAACTCTG GTTTGTTGCA 002560 002561 TCCAAAGGTA CTGTCTTTAC CCATTGGGAG GTTCTTACCC ATGATCTATG ATTCCATCTG AAGGGCATGC TAAAGAGTGT 002640 002641 GCTCCATGAG AGGCTACACA TCTTTTTATA TCCAGTTTCT TACTGGTGCG CTTTTGAGGG ACTGTGGGTT ACTTTAGTAG 002720 002721 GGTCAGATAG ACACAGGCAT TGGCAAGCTA GGCTTAATAG CTTCTTTGTC AATTCAATTT TTAAAAGATA CCGAATGGAT 002800 002801 TTCTTATCTG TTTGTTCCTT GTATAGTTCC TTTTACAAAT AACCACAGAT AGAGATCTCA ATTAGTCATA TTTCTTATGC 002880 002881 CTAACTACTC TTCATTTTTA TTTACGAGAC TCTCTCATAT CTCCTGTACC TACTAACTTA GTGGCTATAT GCTTGCACCC 002960 002961 AGCAAAAACA GCAGTCATGG TTAGGAAGGC AGTGCCCTTA ATATGACCTC TATTGCTTGT CTGGGTTCCA CTGTCCAGCA 003040 003041 GAGAACACTT TGCTGATGGC CTTTGAGAAG TGCCTTGGGT CACAGTTTTA TCTTACACTG TCAGAAGTGT AATAGCTTTT 003120 003121 GGCTTTATCA GAACTAGAAG GCTTGAAATC ACCACTCAGT CAATTTGTAT TGCAGACTAC AGGCAGAGAA CTCCATCTTA 003200 003201 GTATGACTTT ATTTCCTTCC AGCTCTGTTA ACAAAATGAC TAGTTTTTAC CTGAGTTCAT CTTTCTCAAA GTACTTTGCT 003280 003281 AAAGAGACAG GAAGAAGGCA GTACTGTCTC ACTGACCCAG AGATTCACTC CCAACCATTT TCCCTGCTAC TACAGATTCA 003360 003361 AAGAGCAGGT AGTCTGCCTG CTAAGGTACT GAGTTGACAA TTTTATCAAA TGTCTTGTGG CGGGGGAAAA AAAAAAGGAG 003440 003441 GGGCTTGGTC ACCAGCTTTT CACCTGTAAT ACCTGTGCTG CCTGTCAGTT AATTAATACC ACATAATTTA GGTTAATGTC 003520 003521 ATGGTCTCTA CAGAAAATCT GGAGCTAATA CTGGTTTAGC AACATTGCAG CTACAAAATC TATATGCAAA AATCGTATTT 003600 003601 CTATAAGACA AAATAATGGA AATCAAAATT TTAAAAATAC TACTTATTTA TTAACATCAA AAATATTTAA AATTTGTATC 003680 003681 TGACTGAAGA TATGTTAGAC CTGCACATCA AAACCGCAAA ACATTGCTAA GAGAAATGTA AAAGACCTAA ATAAATGTGG 003760 003761 AGCTATACCA |
Predicted Small Protein
Name | ENST00000562143.1_smProtein_638:715 |
Length | 26 |
Molecular weight | 2715.1736 |
Aromaticity | 0.04 |
Instability index | 46.464 |
Isoelectric point | 5.87200927734 |
Runs | 5 |
Runs residual | 0.00830188679245 |
Runs probability | 0.0183006535948 |
Amino acid sequence | MDLVTTLFSCGLDCKEGRRLSSAIV |
Secondary structure | LLEEEELLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |