ENST00000562143.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000562143.1

Source

Gencode19

Same with

lnc-RP1L1-4:1

Classification

intergenic

Length

3770 nt

Genomic location

chr8-:9907995..9911764

Exon number

1

Exons

9907995..9911764

Genome context

Sequence
000001 GGACGAAGTT CTCGGACAGA GAACAAGTGC GCTCCTGTCG TACGAAGTAC GTGAAGCTGC AGAGGCCAAA AAACACGCCG 000080
000081 AGCCCTTGGG GATGCGGTTT GATTTTAAAG TTGCTGCCGT GTCGCCCCGA CTTCGCAGTT TAGCAGTGCC CAGTAAGATA 000160
000161 GAAGAGGACC TGCCTTGCAG CCAGCTAGAC TGTCAGTTTT TATTGGAGAC ATTGTCATGA CGGCCATCAG AAGGGTTGCT 000240
000241 ATTCGTCCAA AGTGAAAACT AAGCACAGTT CTCAAAATGC GCGGAATAGG GAAGATGAAT TCAATATTAA GTTATGTATT 000320
000321 TACAAACATA TTTAAGCCCA TTTTGCAGCG GCCAAAATAC GGGAGCAAGG CACCAACAGC ACCATTAAGG CAGTGTAGGT 000400
000401 GGACTTAATG GTGGTGTTGT ATTATTCTTG TTTCTCAAAT CATAGGAGAT GACATTTGTT CCTGTGACAT TCTCAAACTA 000480
000481 AATGTAAAGT GGTTGGAGCG AGGTGAGTGA CTTGGGAGTT CATCTGTGTG AGATTTTGGC TTAACACATG TTCTGCCAAA 000560
000561 ATGGGCAGGT CGTCTCAGAT GAGGGAGGGA ACTTCAGATT AGCACCCACA GAAAGGAGGC TTTCACCCAG CTTCTTGCAT 000640
000641 GGATTTAGTT ACCACTTTGT TTTCATGTGG TCTGGACTGT AAGGAGGGCA GGAGGCTTAG CAGTGCTATA GTGTAGAATG 000720
000721 AGGTGTGTTG CCAGGCATAC AACACTAAAA AGGCTCTAGC TTTGATTTTG TAATTTGTAT TTCCCCTGGA CAAAATGATA 000800
000801 CCTAAACTGT TTGTTATTGC TATGAGGCTA TACCAAGTCG GTTCCACAGG CCTTTCATGA AAACACCCCC AGGAGTCCCT 000880
000881 TCTAGGCTTG CGAAGGCCTG GTCACTATTA AGGGTCTGAA AAAATAGTCA TTCTGTCAAA GACAATATTT TGTGTTTTTC 000960
000961 AGTTACTTCT TTTTGATACA TACTGATTTG TCTGTGTTTT GTGGTTGATT GTATGAAGTT TCACATGCTA GAAATACTCT 001040
001041 GCAACTAAGA GCTGAAGAAT GTTTAGTGTG AAGAAATAAC TTACTTGGCA TGATGGCTCA CTCCTGTAAT CCCAACACTT 001120
001121 TGAGAGGCTG AGGCAGGAGG ATTGCTGGAG GCCAGGAGTT TGAGACGCCA TCTTTACCAA AAAAAAAAAA AAAAAAGGTA 001200
001201 TTTAAGTAGT TGGGCATGGT GGTGTGGTAG CGCACACCTG TGGTCCCAAC TACTTGGGAG GCTGCACCAG GAGGAACGCT 001280
001281 GGAGCCAGAG AGGTAGAGGC TGCAGTGAGC TATGATCACA CTGCTGTGCT CCAGCCCGGG CAACAGAGCA AGACCTTGTC 001360
001361 TCAAAAAAAA AAAATTAATT TTGATGTTAA ATGAAAAAGT AAAACAAATG CAGTGTGCGT GTATACATGT AGTATATATG 001440
001441 AAAATGCATG TACTCCCAGT TGCACAGCCA CTGAACAATT CGAAAAAAAT GCAATTTTTT TTGTTCAGAA TAGTGGGATT 001520
001521 CTACTGCTTT TCATTGTCTT TAAACTGTTT TAAGTGTTCT GTATTGTTAC AACGTTCTCG AGTATTCCAA TGGCTGTTAC 001600
001601 TTTTATAATT ATAAAAGAAT AAGCATTTTT AAAGAACAGA TATATCTTAT TTCAAAAACA AGGGTTTTTC GTTTACCAGA 001680
001681 ATAGCTGCAA GAAAAGTTAT ATTAGTTTCT TTGGTGTTTT GAGGAAAGAA TTGAACATTT TTGCCTTCAG TGGTGCCTTT 001760
001761 TTCACCACTA GGACTTCCTT TTCTTCAGAC ATTCCCCCTA ATCCAGCGGT CCCCCACCTT TTTGGCACCG TGGACGAGTT 001840
001841 TCGTGGAAGA CAGTTTTTTT CCACAGATGG GGAAGGGGAG ATGGGGGATG GTTTCGGGGT GAAACTGTTC CACCTCAGAT 001920
001921 CATCAGGCAT TAGTTAGCTT CTCATGAGGT GTGTGCAGCC TAGATCCCTC ACATGCACAG TTCACGATAG GGTTTGTCCT 002000
002001 CTGATGAGAA TCTAATGTCG CTGTTGATCT GACAGCCACA TCTAACTTGG GAAGGTGGGA GATGAGGTTC TCTTGCGGAG 002080
002081 TGACTATAGA TACAACTAAT ACTTGGATAT TTGGCAGTTC TAATAATAAA ACAGGAATGT TCTTTGGACA ACTGTGACAC 002160
002161 AATCTACTCC TCTGGCCCCT CAAATATCCA TGGATACCCT TGTGACACAT AGAACACACC CTGTTTGAAG AGAGAAAACC 002240
002241 CAGCATTCTA AGCAGTTACT GCATCCAGCT CAGCGTCCAT GATCTAAAGA TGTAACAGTC CCTTACAAGT CTGATATAAC 002320
002321 TCCTCATGGT CCAATGACCT ACAGAGTAAA TTATGTTATT TATTCCCCTT TCTCTTCCCC ACACAGCCAG TATGCAGTGG 002400
002401 TGAAGTAGGG CACGAAAACT AATTTGGAAG AAGAGTGAGG ACAAAATAGT AGTTCTTTGT CTAAGCGAAT GTGAAGAGCA 002480
002481 GATTAGACTA CAAAGGTAAT GAAGTAAATT CTTGGTTAGA CCCCAGTTCT GTTTTCCAGG AGGAACTCTG GTTTGTTGCA 002560
002561 TCCAAAGGTA CTGTCTTTAC CCATTGGGAG GTTCTTACCC ATGATCTATG ATTCCATCTG AAGGGCATGC TAAAGAGTGT 002640
002641 GCTCCATGAG AGGCTACACA TCTTTTTATA TCCAGTTTCT TACTGGTGCG CTTTTGAGGG ACTGTGGGTT ACTTTAGTAG 002720
002721 GGTCAGATAG ACACAGGCAT TGGCAAGCTA GGCTTAATAG CTTCTTTGTC AATTCAATTT TTAAAAGATA CCGAATGGAT 002800
002801 TTCTTATCTG TTTGTTCCTT GTATAGTTCC TTTTACAAAT AACCACAGAT AGAGATCTCA ATTAGTCATA TTTCTTATGC 002880
002881 CTAACTACTC TTCATTTTTA TTTACGAGAC TCTCTCATAT CTCCTGTACC TACTAACTTA GTGGCTATAT GCTTGCACCC 002960
002961 AGCAAAAACA GCAGTCATGG TTAGGAAGGC AGTGCCCTTA ATATGACCTC TATTGCTTGT CTGGGTTCCA CTGTCCAGCA 003040
003041 GAGAACACTT TGCTGATGGC CTTTGAGAAG TGCCTTGGGT CACAGTTTTA TCTTACACTG TCAGAAGTGT AATAGCTTTT 003120
003121 GGCTTTATCA GAACTAGAAG GCTTGAAATC ACCACTCAGT CAATTTGTAT TGCAGACTAC AGGCAGAGAA CTCCATCTTA 003200
003201 GTATGACTTT ATTTCCTTCC AGCTCTGTTA ACAAAATGAC TAGTTTTTAC CTGAGTTCAT CTTTCTCAAA GTACTTTGCT 003280
003281 AAAGAGACAG GAAGAAGGCA GTACTGTCTC ACTGACCCAG AGATTCACTC CCAACCATTT TCCCTGCTAC TACAGATTCA 003360
003361 AAGAGCAGGT AGTCTGCCTG CTAAGGTACT GAGTTGACAA TTTTATCAAA TGTCTTGTGG CGGGGGAAAA AAAAAAGGAG 003440
003441 GGGCTTGGTC ACCAGCTTTT CACCTGTAAT ACCTGTGCTG CCTGTCAGTT AATTAATACC ACATAATTTA GGTTAATGTC 003520
003521 ATGGTCTCTA CAGAAAATCT GGAGCTAATA CTGGTTTAGC AACATTGCAG CTACAAAATC TATATGCAAA AATCGTATTT 003600
003601 CTATAAGACA AAATAATGGA AATCAAAATT TTAAAAATAC TACTTATTTA TTAACATCAA AAATATTTAA AATTTGTATC 003680
003681 TGACTGAAGA TATGTTAGAC CTGCACATCA AAACCGCAAA ACATTGCTAA GAGAAATGTA AAAGACCTAA ATAAATGTGG 003760
003761 AGCTATACCA
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Predicted Small Protein

Name ENST00000562143.1_smProtein_638:715
Length 26
Molecular weight 2715.1736
Aromaticity 0.04
Instability index 46.464
Isoelectric point 5.87200927734
Runs 5
Runs residual 0.00830188679245
Runs probability 0.0183006535948
Amino acid sequence MDLVTTLFSCGLDCKEGRRLSSAIV
Secondary structure LLEEEELLLLLLLLLLLLLHHHLLL
PRMN -
PiMo -