ENST00000562989.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000562989.1 |
Source |
Gencode19 |
Same with |
lnc-BAI1-3:1 |
Classification |
intergenic |
Length |
1793 nt |
Genomic location |
chr8+:143171188..143172980 |
Exon number |
1 |
Exons |
143171188..143172980 |
Genome context |
|
Sequence |
000001 GGGCAAGTCT CTGCGGGGTG GGACCCTGTC CCAGGACGCA GGATTGGCGC TGAGCTCGGG ATCTCTGTGT GCACCTGCAT 000080
000081 CGCTGGTAGG AGGACGCCCA GGAACCAAGG AGTGAGGCAG GAGCAGCCCC CGGCATCATC ACTCCCAGTG ACCCAGGAAG 000160 000161 GGATTTGTGC TTTTTTCCCT GCGGCTCTGG GCACTGCAGA GTTAGAGGTC CTGGTCCCCG GGGATGGAGG GAGGGGGTAT 000240 000241 ATCAGCGGGC ACAGAGCATG TCCAGTGACG CACAAACCAC GGCTGCCCTC TGGTGCGTCG GGTTCCTTGT GGGGGGATCA 000320 000321 CCAGGCAGGA GAGAGCACCA CCGTCCTGGC AGGTACAACA GACCCCAGCC AGAGGGTGGA GGCGGGGCCG CGGCTGCACA 000400 000401 GGGGGCATGT GGGGAATTCA GGTGATCTGC GTGGACACCT CATGGTGGCC CTGGCCAGCT GTCACTAAAT GGGCAGCTAC 000480 000481 GGCAGGCCCC GCTGGACATG GCATGGTGGC AGGGTGCCAG AGCCCTCGGT AGGAAGGACT GGGTCACAGC ACTAAGTGAA 000560 000561 CTGCTGTTGT CTGCAGAGAC ATAACTGAGG GTGAGGGTCC GGGCTGGGTA ATGGAAGGAG GGGGAAACGG CTCAAGGGGG 000640 000641 CTAGCATGGG CGCAGCAGCC ACTGCACTGG GGCCATGATC ACAGAGTCAT TGCCCAGAAG CATAGCTCCG GGGCACTGGG 000720 000721 CCATGCTCGT GACTTGGTGA ATGAGTGAAT GGGTGAGTGA ATGAGCTTCA CAGATTTCCA CAGTGAAGAG AACCCTTAGA 000800 000801 GTGTCTGATC CGCCCCTCCA TTTGCAAAGC ACAGATCTGG AAACTGGACG GCCCCAAACT GAGTCCAAGT CCTGCATCTG 000880 000881 CCAGTCGTGT GAACTTGGGT GAGTGACTTA GCCTCGCTGT GTCTCAGTTT CCTTATCAGG AAAATCTAGC CATTCACCAC 000960 000961 CCCTTCCTCA GTGGGCTGCT GTGGGGACTG GAGTTAGCAT GTGCACGGGC AATGCTAACA GGCACATACA AAGCACCAAG 001040 001041 CAAGCGTGAG CTTTGGGTAC TTTTTATCAC CGTATAGACC AGGCGCTGAG ACCCAGAGAG GCCAGCGACT TTCCCAACGC 001120 001121 TGCGCAGTGA GCCAGGTGCA GGGCTGGGTG GGTCTTGGGT GCCCGGTTCC AGGGCGGCTG CTGGGCCAGG ACTGCAGGAT 001200 001201 GCTGGAGGAG AAAGAGTCCT GAGGTCCCCA GCTGCCTTCT GGGGCTGACA GGCCTGTTCC TTGGCCTGGA GAATTCCTCT 001280 001281 GAGAAGAGCG AGCAGCTCAG TGAGGACACA TGAGGCCACC CAGGCCAGGA GGGGACTTCA AAGCCATGGA CAGCTCACAA 001360 001361 TCCCCAGGCG GGGACATGGG AGGCTTCCTT TCCATTGCTG TTTGATTTCA GCCTCCCAAT TAGCCATGCC TAAGTAATGC 001440 001441 ACTCAGGGCC GTATCCATTG TTTATGAGAA TAAGCAGGCA TGAGAACGCC CTTCTCTCTG CAAGAAGATG CCCGCCCTTA 001520 001521 CCAAGGTGAC TTCCAAGGAC TTCAGGAACC TGAAACCTCG TCCTTGATCG ACTCGTGGTG TTGAAGGCCC TGCCAAAGCC 001600 001601 AGCCTGGCAC TGCTCTCTGG GATGGAGACG GGAGATGGCA TTCCGGGTCT AAATTCTCGT GGGTGGTTCT CAGCTGTCAG 001680 001681 GAGGTGCCAG GCTTACCTGC CAGGACCGTG GTTTTCTGTC ATTGTAACTG TGGGAATGGC TAAGTCCTGT CTATGACAGT 001760 001761 CACACGAAAT AAAGTGTTCT GTGCTCCAGG AAA |
Predicted Small Protein
Name | ENST00000562989.1_smProtein_257:424 |
Length | 56 |
Molecular weight | 5684.2054 |
Aromaticity | 0.0727272727273 |
Instability index | 66.4909090909 |
Isoelectric point | 8.93804931641 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0346102404926 |
Amino acid sequence | MSSDAQTTAALWCVGFLVGGSPGRREHHRPGRYNRPQPEGGGGAAAAQGACGEFR |
Secondary structure | LLLHHHHHHHHHHHLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |