ENST00000562989.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000562989.1

Source

Gencode19

Same with

lnc-BAI1-3:1

Classification

intergenic

Length

1793 nt

Genomic location

chr8+:143171188..143172980

Exon number

1

Exons

143171188..143172980

Genome context

Sequence
000001 GGGCAAGTCT CTGCGGGGTG GGACCCTGTC CCAGGACGCA GGATTGGCGC TGAGCTCGGG ATCTCTGTGT GCACCTGCAT 000080
000081 CGCTGGTAGG AGGACGCCCA GGAACCAAGG AGTGAGGCAG GAGCAGCCCC CGGCATCATC ACTCCCAGTG ACCCAGGAAG 000160
000161 GGATTTGTGC TTTTTTCCCT GCGGCTCTGG GCACTGCAGA GTTAGAGGTC CTGGTCCCCG GGGATGGAGG GAGGGGGTAT 000240
000241 ATCAGCGGGC ACAGAGCATG TCCAGTGACG CACAAACCAC GGCTGCCCTC TGGTGCGTCG GGTTCCTTGT GGGGGGATCA 000320
000321 CCAGGCAGGA GAGAGCACCA CCGTCCTGGC AGGTACAACA GACCCCAGCC AGAGGGTGGA GGCGGGGCCG CGGCTGCACA 000400
000401 GGGGGCATGT GGGGAATTCA GGTGATCTGC GTGGACACCT CATGGTGGCC CTGGCCAGCT GTCACTAAAT GGGCAGCTAC 000480
000481 GGCAGGCCCC GCTGGACATG GCATGGTGGC AGGGTGCCAG AGCCCTCGGT AGGAAGGACT GGGTCACAGC ACTAAGTGAA 000560
000561 CTGCTGTTGT CTGCAGAGAC ATAACTGAGG GTGAGGGTCC GGGCTGGGTA ATGGAAGGAG GGGGAAACGG CTCAAGGGGG 000640
000641 CTAGCATGGG CGCAGCAGCC ACTGCACTGG GGCCATGATC ACAGAGTCAT TGCCCAGAAG CATAGCTCCG GGGCACTGGG 000720
000721 CCATGCTCGT GACTTGGTGA ATGAGTGAAT GGGTGAGTGA ATGAGCTTCA CAGATTTCCA CAGTGAAGAG AACCCTTAGA 000800
000801 GTGTCTGATC CGCCCCTCCA TTTGCAAAGC ACAGATCTGG AAACTGGACG GCCCCAAACT GAGTCCAAGT CCTGCATCTG 000880
000881 CCAGTCGTGT GAACTTGGGT GAGTGACTTA GCCTCGCTGT GTCTCAGTTT CCTTATCAGG AAAATCTAGC CATTCACCAC 000960
000961 CCCTTCCTCA GTGGGCTGCT GTGGGGACTG GAGTTAGCAT GTGCACGGGC AATGCTAACA GGCACATACA AAGCACCAAG 001040
001041 CAAGCGTGAG CTTTGGGTAC TTTTTATCAC CGTATAGACC AGGCGCTGAG ACCCAGAGAG GCCAGCGACT TTCCCAACGC 001120
001121 TGCGCAGTGA GCCAGGTGCA GGGCTGGGTG GGTCTTGGGT GCCCGGTTCC AGGGCGGCTG CTGGGCCAGG ACTGCAGGAT 001200
001201 GCTGGAGGAG AAAGAGTCCT GAGGTCCCCA GCTGCCTTCT GGGGCTGACA GGCCTGTTCC TTGGCCTGGA GAATTCCTCT 001280
001281 GAGAAGAGCG AGCAGCTCAG TGAGGACACA TGAGGCCACC CAGGCCAGGA GGGGACTTCA AAGCCATGGA CAGCTCACAA 001360
001361 TCCCCAGGCG GGGACATGGG AGGCTTCCTT TCCATTGCTG TTTGATTTCA GCCTCCCAAT TAGCCATGCC TAAGTAATGC 001440
001441 ACTCAGGGCC GTATCCATTG TTTATGAGAA TAAGCAGGCA TGAGAACGCC CTTCTCTCTG CAAGAAGATG CCCGCCCTTA 001520
001521 CCAAGGTGAC TTCCAAGGAC TTCAGGAACC TGAAACCTCG TCCTTGATCG ACTCGTGGTG TTGAAGGCCC TGCCAAAGCC 001600
001601 AGCCTGGCAC TGCTCTCTGG GATGGAGACG GGAGATGGCA TTCCGGGTCT AAATTCTCGT GGGTGGTTCT CAGCTGTCAG 001680
001681 GAGGTGCCAG GCTTACCTGC CAGGACCGTG GTTTTCTGTC ATTGTAACTG TGGGAATGGC TAAGTCCTGT CTATGACAGT 001760
001761 CACACGAAAT AAAGTGTTCT GTGCTCCAGG AAA
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Predicted Small Protein

Name ENST00000562989.1_smProtein_257:424
Length 56
Molecular weight 5684.2054
Aromaticity 0.0727272727273
Instability index 66.4909090909
Isoelectric point 8.93804931641
Runs 7
Runs residual 0.0242424242424
Runs probability 0.0346102404926
Amino acid sequence MSSDAQTTAALWCVGFLVGGSPGRREHHRPGRYNRPQPEGGGGAAAAQGACGEFR
Secondary structure LLLHHHHHHHHHHHLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLL
PRMN -
PiMo -