ENST00000563962.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000563962.1 |
Source |
Gencode19 |
Same with |
lnc-ARHGAP17-2:2,NONHSAT141383 |
Classification |
intergenic |
Length |
766 nt |
Genomic location |
chr16-:25097654..25122800 |
Exon number |
3 |
Exons |
25097654..25098044,25114672..25114962,25122717..25122800 |
Genome context |
|
Sequence |
000001 GCTATAATTA ACTCAGGGCG GAACAGCTAG CAGAATCCTC AGCGTTCGGG CAAAGGGCAG AGAATCCAGC CAGAAGCAAC 000080
000081 ATGTAGATCT AATGACCTTC TCCAGGAGTC GAGGACCCAC TACCTCGCTG AATTCTCAGA GTCAAAATGC GTCTCTACCT 000160 000161 GCTGGTCCCA GAACAGTCCC CTGCTGCTGC ATTGAATGAA TCTCATCTCA CTTCCTCGAG TCAGCCCTAC CTATATTTGA 000240 000241 TGATCACAAA CCTTATCCTT ACGTTGCCAG CAGTAACATT CTGCATCCCT CACCCACTCC ACTGTGTCCT TTTCCTCCCA 000320 000321 CTGATCTTCA CTCTGCCTTT TCTAGGGGAA CTCTGAACAG TATTTCTGAG AAGGGGATGA AGATCGTCTC CCAAGTAAAT 000400 000401 ATGTTGAGTT TGACTGGGCA CCGTGGCCCA CACCTGTAAT CCCAGCACTT TGGGAGGCCA AGGCGGGCAG ATCACTTGAG 000480 000481 GCCAGGAGTT CGAGACCACC CTGGCCAACA TGATGAAACC CTGTCTCTAC TAAAAATACA AAAATTGGCC CGGCATGGTG 000560 000561 GCATGCACCT GTAATCACAG CTACTCAGGA GGTTGAGGCA GGAAAATCAC TTGAACCTGG GAAGTGGAGG TTGCAGTGAG 000640 000641 CCATGATCAT ACCACTGCAC TCCAGCCTGG GTGACAGAGT GATACTCCGT GTCAATAATT AAATAAGTAA ATAAATAAGT 000720 000721 TGAGGTCAAC TTTCAAATGA TCGTCATGAG AAAGCTACAC AGTATT |
Predicted Small Protein
Name | ENST00000563962.1_smProtein_146:355 |
Length | 70 |
Molecular weight | 7737.2102 |
Aromaticity | 0.101449275362 |
Instability index | 58.4550724638 |
Isoelectric point | 5.74176025391 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0716224245637 |
Amino acid sequence | MRLYLLVPEQSPAAALNESHLTSSSQPYLYLMITNLILTLPAVTFCIPHPLHCVLFLPLI FTLPFLGEL |
Secondary structure | LEEEEELLLLLHHHHHLLLLLLLLLLHHHHHHHHHHHHHLLLLEEELLLLLLHHHHHHHH LLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooo ooooooooo |