ENST00000564305.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000564305.1 |
Source |
Gencode19 |
Same with |
lnc-C16orf72-3:1,NONHSAT140461 |
Classification |
intergenic |
Length |
5298 nt |
Genomic location |
chr16+:9449445..9501950 |
Exon number |
3 |
Exons |
9449445..9449637,9495587..9495640,9496900..9501950 |
Genome context |
|
Sequence |
000001 TGGAGGTAAT TGAATCATGG GGGCAGTTTC CCCCATGCTC TTCTCTCGAA AGTGAGTGAG TCTCACAAGA TCTGATGGTT 000080
000081 TTATAAGGGG TTCCTCCCCC TTGGCTCAGC ACTTACCCTT CCTGCCGCCC TGTGAAGAGG TGCCTTCCAC CATGATTGTA 000160 000161 ACTTTCCTGA GGACTCCCAA GCCATGCAGA ACTGGCTTCT ATGAGGCTGT CTTGTAGGAT GCCCATGACG ATCCTCCAGA 000240 000241 CACTAAGATG AGAAAACTAA GGCCCAAAGG GACACCTGGC TTTCCTAAGA CCTGTAAGTG GAAGAGTCAG CATTTGAATG 000320 000321 GAGAACTCGC AGCTTTCGGA GTCTAGACTT GTTTTACCTC ACCAGACTGC TTCTACTCCT AGTGATTCCT TCCCTTAGAT 000400 000401 TAAGCCTTGC TCTCTTCCCG TGCAATCATG AAGAGGATTA TATTAGTAAA TCCCTGAACA TTCCCTGATT GGGGAGTGAG 000480 000481 GGTCAAACCA AGGCAAATGG CAGGATTGAC ACTCACATCA AGGGCTGGCT CATTAAGGGC TCGGGACCTG GCGATCGAGT 000560 000561 TGCATTGCAG ATTTTGGAAG TATGCAAGAC CACGCCAGCC ACCTTTCCAG GGAGAGACCA TGCAAAGAAG GCAGGTGATC 000640 000641 CAAGGGCTGG GAGTGGTGAG GACTGCTCCA GCCCCTGAGC AGCTGTCATC CCAGCACAAA GTGTCAGAAG AGACCTCAAA 000720 000721 GTGTGGTCTG CAGACGAGGC AGCATCTGCA TCACCTGGGA GCTTGTTAGA AATGCAGAAT CTTCTGAGAG AACCAGACCT 000800 000801 GCTGCATCAA AATCTGCATT TTAACAAGAT TGTAACTTAG ATACACAGTA ACACTTAAAA AGGATGGGGC AGAGAGGCTA 000880 000881 AGTCAGCAGC TTCTCATCAC ACTCCAATCT GATGCTGCTA GTGCTCCAAA AAGCTCTCAT ATCCTCACTG ACTAGCCTAG 000960 000961 GGCTGTGTCT ATCAATGCAT TATATGACAC AGATGAAGAC TATTGTGTAC CTTCCTCAAT TTTTACCCCA TTGTTTCAGC 001040 001041 CTTTTGTACA TCTTTAATGC AAACATCCAT GCGAGAATTC TTGTGACATT AATTTTTTGG AACAACCTGT TTTGCAGAGC 001120 001121 AAATTTCATT AAGCCATTTT AATCCAGAGT TTAATTTTTT ATACAGCTCG ACTCAATCAT TTCCATTTTT TTTCCATTAG 001200 001201 AATGTCTATT TGTAGTAACA TTATTTTCAT GGGATCAATT ATTTTCTGTT TAAATTTACA ACAGGCATTT GACTCATCAG 001280 001281 TCTCTTTTTA TATACCATCT TTTTGCTGAT TCTGACTTCT GCTATTTGGA GAGGTTTTCT TGTTTGTGTG TTTGATTCTT 001360 001361 TTGTGGCCAT TCTTTCTATT AAGTGAAAAT CGTCTGGATC AAATTTTGTA GATTTAAATT TTGTTATTAG TGATACCTGT 001440 001441 TTTTTTTCCC TGTCAATTTT AGCTCATTAC ACATTCTAGT CATTTTAACC CTGCTAGTTT TGTTAGTTGC TGATCACTTT 001520 001521 TACCATACCA GTAATACGTG GTAGAAATAA TCACCAGAAT GAAAACTCTG CAAAGGCAGG ATTTCTGTCC CTTTTTTTTT 001600 001601 TTGTTTTTTT TTTTTTCCTG CCTTATACTT GAGACTTAGT GCATGGCACA TAGAAAGTGC TCCATATGGC CAGGCGCAGT 001680 001681 GACTCACGCC TGTAATCCTT GCACTTTGGG AAGCCAAGGC AGGTGGATCA CTTGAGGTCA GGAGTTTGAG ACCAGCCTGG 001760 001761 CCAACATGGT GAAACCCCGT CTGTACTAAA AATACAAAAC ATTAGCCAGG CATGGTGGCG GGCACCTGTA GTCCCAGCTA 001840 001841 CTCGGGAGGC TGAGGCAGAG AATCACTTGA ACCCAGGAGG CAGAGGTTGT GGTGAGGTGA AGTCACACCA CTGCACTCCA 001920 001921 GCCTGGGTGA CAGAGCGAAA CTCCATTTAA AAAAAAAAGA AAGAAAGTAC TCCATAAATA TTTGTAGGTG GAAAGAATGA 002000 002001 TATTCACATA TGATTTAATC AAAGACTGAC AGTTTATCTA TTTGATAAAA AGACTGTGAG AAGCAGAGAT TGATGGAGAC 002080 002081 AGGAGAGAAA GTGGAGGAGA AGAGAAGATG GAGACAGCAC ACACACATGC ACAGACTTGA ACATGCAGAC ACACATTGCA 002160 002161 CATGCACATG CATGCACACA GCCACACACG TATACACAAA CACACATGCG TGCACACAGC CACACGTATA CACAAACACA 002240 002241 TGCGTGCACA CACCACACAC ATATATGTAA GCACACATGC ATGCACACAG GCATACACAT ATACATAAAC ACGCATGCAC 002320 002321 ACAGCCACAC ACATATACAC ACAAGCATGC ACATACACAG AGGCATATAT ACACATGCAC TAACATACGC ATAGTCACAG 002400 002401 ATACACCTGT AGGTGCAAAC ACCTATATAT GTGTTCACAT TCATACACGG GAGTTATTAT ATTTGTGCTC ACACATGTAG 002480 002481 AGGGTAGAAT TGTGGTTATT AGATGCTGGG AAGAGTAGAG GAAGAGAAGA TAGGGAGAGG CTGGTTGGTG GATACAAAGT 002560 002561 TACAGCTGAA TGAGAGATAA TTTTGACTGT TCTGTATACT GTAGGATGAA TATGGTTAAC AATAACTTAG TGTATATTTT 002640 002641 CAAAAAGCCA GAAGAGAGGA TCTTGAATGT TCACAGCACA AATAAATGAT AAATGTTTGA GGTGATGGAT ATGCTACTCT 002720 002721 GATTTGATCA TTACACATTG TATAAATGTA TTGAAAAATC ACTCTGTATC CCATAAATAT GTATAATTAT TATGCATCAA 002800 002801 CTAAAAATTA AAGACCACAC ATATATGCAC ACATAGACAT GCACATGAAC ACACATACTC ATGCATATGT GTATACATGC 002880 002881 AGAGTTACAC ATATACACAA ACACACATAT ATGCACACAT AGACATGCAC ATGAACACAC AGACATACTC ATGCATATGC 002960 002961 GTATACATGC ACAGTTACAC ATACACACAC ATGCACACAT AGACATGCAC ATGAACACAC AGACATACAC ATGCATATGC 003040 003041 GTATACATGC AGTTACACAT ATACACAAAC ACACATATAT GCACACATAG ACATGCACAT GAAGACACTA TGCACATGTC 003120 003121 CACACATGCA CACAGCCACA CACATACATA TATACACAAA TACCCATAAA TATGCACATG TAGACAGCAT GCACACAGAG 003200 003201 ATACATATGC ACACACACAG CCACATGTAT ACACACTTGT GCAAATGTAT GCACACACAG ACACACATAT GCCCATACAT 003280 003281 AGGCATATAC ACGTACAGAT TCAGATATAA ACACATACAA ACACTCATGT ACATATGCAA ACACATGTAC ACACACAGTC 003360 003361 TGCTGGCATA GTGATGGCTA AACCAATGCA GGGTAGGGTA AAATGTCTCT GGTGCAAGGT CAGTAGGATA AAATCTGCAG 003440 003441 GATCAAATGG AATGCTTAAC AACACTCCTC TGTGGGGTAT CAGTGTCTCC ATTTTACAAC CAGTGCTTAA TCAAATGCAC 003520 003521 ATTGAGTTGA ACTGAATATT GGAAAATGAA TTGCTACCTT TGAATGAATC TACTGAAAAA TTATACTTGT CCTGGGTCAG 003600 003601 ACCGTGTGAA AAGCACTGGG TATTGGAGAT GAAAAGTGGT TGGCCCTTTT TCTTTGAAAG CTTAGTCCAG TGGGGAAGAT 003680 003681 GGATGTGGAA GCTGAGCAAT TAAAATGCAG CTTGATAAAA GCTGTGCTGA AAAACCCTCA CTGAGCTGAG CAGTGGGGGC 003760 003761 TGGGAGGGAG CAGGTCTTAA ACTGAATGAT CAGGTTTAGT GGGAGCTGTT TAAATTCTGA GCCATCAGGC ATTTTTGCTG 003840 003841 GATTCCTTTC GGTGCGCTTG TTAATCAATT ATAAAATAAT AATAATGAAC ACTTCAGGAG AGAGGATGGA GGTTGAAAGA 003920 003921 CAGTGGAGGG CTGGACTTGA GGTTGGAAGA TTTGCAGAGA CCTGGATTGT GCATTCGACC TTTACAAATT GAAGCGAGAG 004000 004001 GCTTTGCATC TCTGAACATC AGGATTCCAC TCTATAAAAA GGAGAATGAA AGCATTCAGT TTATAGGTTT GCTGTGAGGG 004080 004081 CTCAACGAGA ATGTGGATCC AAAAAAGCTT TGGAAACCAA AATACCGCTA GTTAGCTTGC TGCTTTATTA TCCAAAAGAG 004160 004161 GCTGCAAAGA TTTGAGGTTT GTTTGTAGTT TGTTTGTAGA TTAGTCAGTG TCTACTAAAA TAACACTGTG TAACAACCAT 004240 004241 GCCCAAATCT TGGTGGCTTA ATACCTTAAA CGTTATTTTT CTCATTCATG AGGCTGTAGG TGGGTTGGAA TTTGGCAGAT 004320 004321 GTAGGCTGGA ATTAGCTGGA CCTGCCTCCA GGACCAGGGT TGGACCCAAG TCTTCTGTAC GTGTCACCTT CTTTTGGTGC 004400 004401 CAGTGCTACC TGGGATTTTA ATTTCATGGT TTTGCAGAAG CGTAAGAGGG CATGCCAACC ACGTGAACAC TTTTAAAGCC 004480 004481 TAACATCCTA TAGGCCAAAG CCAGCCACAG GTCCAAACTC AACTTCAATA GGCAGGGAAA GTCCTCCACC TACTTTACCA 004560 004561 GGGGAGTACT GCAGAGCAAT GACCGAGGAA GGAAATGTTT AATCCTATTA GGGAGGGAGG GGGGGACCAG GAACACAAAT 004640 004641 CCCTCAAGGC AGGACGAGTA ATGGTTGGCT GCCCAAGGTT GACAGACTGG GTCTCAGTTC CTGGCACTGC TCCTCTCTAG 004720 004721 CCATGAGACT TTAGGCAAGT CAACATTTCA GAGCCTCAGT TTCCTCATCT GTAAAGTGGG TATAATAATA GAATTCTCAC 004800 004801 AGAATTTCAG TGAGGATTGC CTGATTCATG ACAACAGCCT TATAAGTGGT CCCCTTCTTT TACCTCGCAT CTTCTGTAAT 004880 004881 CTCTTCTCTA TGCTTCATCC TTTAAATACA AAAGTCACCC GTAAAGACAG AAAACAGATT AGTGGTGGCC AGAGGTGGTG 004960 004961 GAGGGAGAGA GGGGGAGAAA TGAGAGAAGT GCTAAGGGGT ATGAGGTTTC CTTTTGGGGC GATGAAAATG TTCTAAAATC 005040 005041 GATGTGGTTA TGGTTGTACA ACTGCAAATA TACAATCCCT CTGCCTGGAA CCTTTTCCCC AAGAAATCTG CCCCCACCGT 005120 005121 AAATCCTCAC TTGCATACTG TATAATGAGG CTTTTCTGGA CCACCCTATT TAATTACCCA CTCCTTTCTG TCCATGCCTC 005200 005201 TCTCTCGATA TATTTTCTCT GAATGTTTGT AGCAACTTGA CATATTTTGC ATGCTTATAC ACTATGTACT TTATATTAAA 005280 005281 GCACAGTTAT GTAATTTA |
Predicted Small Protein
Name | ENST00000564305.1_smProtein_3092:3370 |
Length | 93 |
Molecular weight | 11181.0537 |
Aromaticity | 0.108695652174 |
Instability index | 76.75 |
Isoelectric point | 8.95928955078 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0395027380322 |
Amino acid sequence | MHMKTLCTCPHMHTATHIHIYTNTHKYAHVDSMHTEIHMHTHSHMYTHLCKCMHTQTHIC PYIGIYTYRFRYKHIQTLMYICKHMYTHSLLA |
Secondary structure | LLLLLLLLLLLLLLLLEEEEELLLLLEEEELLLLHHHHHHHHHHHHHHHHHHHLLLLEEL LEEEEEEEEEHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |