ENST00000564523.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000564523.1 |
Source |
Gencode19 |
Same with |
lnc-HBG1-1:1 |
Classification |
intergenic |
Length |
994 nt |
Genomic location |
chr11-:5265784..5266777 |
Exon number |
1 |
Exons |
5265784..5266777 |
Genome context |
|
Sequence |
000001 GTTAGCAGTA ACTGCTGAAT TCCTGGTTGG CTGATGGAAA GATGGGGCAG CTGTTCACTG GTACGCAGGG TTTTAGATGT 000080
000081 ATGTACCTAA GGATATGAGG TATGGCAATG AACAGAAATT CTTTTGGGAA TGAGTTTTAG GGCCATTAAA GGACATGACC 000160 000161 TGAAGTTTCC TCTGAGGCCA GTCCCCACAA CTCAATATAA ATGTGTTTCC TGCATATAGT CAAAGTTGCC ACTTCTTTTT 000240 000241 CTTCATATCA TCGATCTCTG CTCTTAAAGA TAATCTTGGT TTTGCCTCAA ACTGTTTGTC ACTACAAACT TTCCCCATGT 000320 000321 TCCTAAGTAA AACAGGTAAC TGCCTCTCAA CTATATCAAG TAGACTAAAA TATTGTGTCT CTAATATCAG AAATTCAGCT 000400 000401 TTAATATATT GGGTTTAACT CTTTGAAATT TAGAGTCTCC TTGAAATACA CATGGGGGTG ATTTCCTAAA CTTTATTTCT 000480 000481 TGTAAGGATT TATCTCAGGG GTAACACACA AACCAGCATC CTGAACCTCT AAGTATGAGG ACAGTAAGCC TTAAGAATAT 000560 000561 AAAATAAACT GTTCTTCTCT CTGCCGGTGG AAGTGTGCCC TGTCTATTCC TGAAATTGCT TGTTTGAGAC GCATGAGACG 000640 000641 TGCAGCACAT GAGACACGTG CAGCAGCCTG TGGAATATTG TCAGTGAAGA ATGTCTTTGC CTGATTAGAT ATAAAGACAA 000720 000721 GTTAAACACA GCATTAGACT ATAGATCAAG CCTGTGCCAG ACACAAATGA CCTAATGCCC AGCACGGGCC ACGGAATCTC 000800 000801 CTATCCTCTT GCTTGAACAG AGCAGCACAC TTCTCCCCCA ACACTATTAG ATGTTCTGGC ATAATTTTGT AGATATGTAG 000880 000881 GATTTGACAT GGACTATTGT TCAATGATTC AGAGGAAATC TCCTTTGTTC AGATAAGTAC ACTGACTACT AAATGGATTA 000960 000961 AAAAACACAG TAATAAAACC CAGTTTTCCC CTTA |
Predicted Small Protein
Name | ENST00000564523.1_smProtein_200:325 |
Length | 42 |
Molecular weight | 4677.6636 |
Aromaticity | 0.0975609756098 |
Instability index | 69.4804878049 |
Isoelectric point | 9.35467529297 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0788856082975 |
Amino acid sequence | MCFLHIVKVATSFSSYHRSLLLKIILVLPQTVCHYKLSPCS |
Secondary structure | LEEEEEEELLLLLLHHHHHHHHHHHHHLLLLEEEEELLLLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooooo |