ENST00000565336.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000565336.1 |
Source |
Gencode19 |
Same with |
lnc-FNBP1L-2:1 |
Classification |
intergenic |
Length |
1766 nt |
Genomic location |
chr1+:94312730..94314495 |
Exon number |
1 |
Exons |
94312730..94314495 |
Genome context |
|
Sequence |
000001 CCTGCAACTC TGGGGTCCCG GCCGGGCTGG AGCGGCCGCC GGAGAGACCT GGTAGGCGGG GCGCTTGGGG CAGGAAGGGA 000080
000081 GCCGGGGAGG GAAAAGCGCG ACTGTGATTC GTACGGCTGG GCCCGGACCG TGAAGGGGAC CGGGTTGCGG CTGCCCTCAC 000160 000161 ACCGACCAGG TGGGACCGTC GGACTGCGGC CGCCCTTGGC TCAACTGGGT CGCCGACCTT GTTGAGGGGC GACCACTGCG 000240 000241 GGGAGACCGA GAGCCTGCGG CTGGCGTTTG AGGCGGATGG CAGTGCCCTG AGCGCGGCGG CTGGGTCTCG GTGACACTGA 000320 000321 CGACGGGAGG CGCGGTCGGA AGAGCGCGGG GCCGTCGCCT CTGGCTTAAC ATAGCAGATG CGCTGAGACT CCAACAGGTG 000400 000401 GCTCCGTGGC GCAATGGATA GCGCATTGGA CTTCTAGAGG CTGAAGGCAT TCAAAGGTTC CGGGTTCGAG TCCCGGCGGA 000480 000481 GTCGTAACGC TTTTTTCCCT CCCCCCTACA ATTTATTTTC TGCCTCCATC ATGTCTCTTA TTTTTTTTTT TTGCTAAACG 000560 000561 GTTTAACTTC TCTCTCATTC CCTGCTCTCG CAGTTCACTG CATTCGGTTC TTGCGGTCCT TTCTTAAGCG GCTCGCAGGG 000640 000641 TCCCGAGCCC CTCAGCTCCC CGGGCCTCGG TGGCCCAGGG CCCAGCTCAG CCGACTGGGC AGTCGATGTA GGTCCTGAGA 000720 000721 AGAGCGGCGG CGGCGGCGGC GGCGGCGGCG AAGGAAAAGC GACACTGAAG CGAAGGCTCG CGGTTTCGGC CTAAAGGAAA 000800 000801 GTGCAGGGGA GGCCCGGGTC TCGGGTGACA CCCCCACGCC TTGAGCGGGA CTGTGGTTGC GAGGGAGGGA CGAGAAAACA 000880 000881 CGCCTACGCC CTGCGTGCGC TGTGCTGACT ACCTCTCCAG CATGGAGGCT TCCAGATGAG CAGACACCCG AATCCCAGCG 000960 000961 GGAGCCCGTC AAAAATGGAG ATTTCTGCCG TCACTCTGGG ACTCTTAATT CGGTCCGTCT GGGGTGGGGC CCAGGAATCT 001040 001041 GCATTTCTGA TAAGGTCACC CGCTCCCCTC CCCCATTATT CCAGTGCAAA GAGGTCCTAG GCCCAGTGCC CATCAGCTCC 001120 001121 TCAAGACAGG AATTACTATA TCTTTTTCTG ACAACTGTTA ACTTTGTACA AGGTTAGCAA ATAAATCCAG GAATGAATGG 001200 001201 AATCTTAAAA CTCGTAAAAC AACAATGAAA GGTAATTCAC ACAAAAGATA CAAAATCCAA AATTGTCAAA AAAGATACAG 001280 001281 GGAAAAGTAA ACATCCATGT TATTCCTATA GTCCAGCCTT GCAATTCTCT CCACAAGCCA TTAGTGGTAA TGGTTTCTTG 001360 001361 GAAATATTTT CAGATTTATT TTATGCCCAT ATCAGCATTT TTAACATCTT TTGTCATAAA TATGTCGTAA ATAACAATGT 001440 001441 TATTGATACA TATCCTTTTA AAAACACAAT GGTAGTATGC TATACTGGCT TGTTTTACTT ATGAATATAT GTAGAGCTGC 001520 001521 CTCGTTCCAT TGTACGTATG TATGGTAATG ATTTAACAGT CCCTAATAGC TGGACATTTA GATTGCCAGT ATTTTCCTAT 001600 001601 TACAAACAAT GCATCAGTGA ACATCCTTGT TCTTTTATTA TTGTACACAA GTACAGGTAC ATCTATCTGT AGGATAGATT 001680 001681 CCTAGAAAGT TGAATTGCTG GTTCAAAGGT TTGTGCGTTC TTAATCTGTA CATTTTTTAA TATATATTGG CAAATTGCCC 001760 001761 CATAGA |
Predicted Small Protein
Name | ENST00000565336.1_smProtein_935:1099 |
Length | 55 |
Molecular weight | 5761.5529 |
Aromaticity | 0.0555555555556 |
Instability index | 114.235185185 |
Isoelectric point | 10.9313354492 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0441491912081 |
Amino acid sequence | MSRHPNPSGSPSKMEISAVTLGLLIRSVWGGAQESAFLIRSPAPLPHYSSAKRS |
Secondary structure | LLLLLLLLLLLLLLEEEHHHHHHHHHHHLLLHHHHHEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |