ENST00000565336.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000565336.1

Source

Gencode19

Same with

lnc-FNBP1L-2:1

Classification

intergenic

Length

1766 nt

Genomic location

chr1+:94312730..94314495

Exon number

1

Exons

94312730..94314495

Genome context

Sequence
000001 CCTGCAACTC TGGGGTCCCG GCCGGGCTGG AGCGGCCGCC GGAGAGACCT GGTAGGCGGG GCGCTTGGGG CAGGAAGGGA 000080
000081 GCCGGGGAGG GAAAAGCGCG ACTGTGATTC GTACGGCTGG GCCCGGACCG TGAAGGGGAC CGGGTTGCGG CTGCCCTCAC 000160
000161 ACCGACCAGG TGGGACCGTC GGACTGCGGC CGCCCTTGGC TCAACTGGGT CGCCGACCTT GTTGAGGGGC GACCACTGCG 000240
000241 GGGAGACCGA GAGCCTGCGG CTGGCGTTTG AGGCGGATGG CAGTGCCCTG AGCGCGGCGG CTGGGTCTCG GTGACACTGA 000320
000321 CGACGGGAGG CGCGGTCGGA AGAGCGCGGG GCCGTCGCCT CTGGCTTAAC ATAGCAGATG CGCTGAGACT CCAACAGGTG 000400
000401 GCTCCGTGGC GCAATGGATA GCGCATTGGA CTTCTAGAGG CTGAAGGCAT TCAAAGGTTC CGGGTTCGAG TCCCGGCGGA 000480
000481 GTCGTAACGC TTTTTTCCCT CCCCCCTACA ATTTATTTTC TGCCTCCATC ATGTCTCTTA TTTTTTTTTT TTGCTAAACG 000560
000561 GTTTAACTTC TCTCTCATTC CCTGCTCTCG CAGTTCACTG CATTCGGTTC TTGCGGTCCT TTCTTAAGCG GCTCGCAGGG 000640
000641 TCCCGAGCCC CTCAGCTCCC CGGGCCTCGG TGGCCCAGGG CCCAGCTCAG CCGACTGGGC AGTCGATGTA GGTCCTGAGA 000720
000721 AGAGCGGCGG CGGCGGCGGC GGCGGCGGCG AAGGAAAAGC GACACTGAAG CGAAGGCTCG CGGTTTCGGC CTAAAGGAAA 000800
000801 GTGCAGGGGA GGCCCGGGTC TCGGGTGACA CCCCCACGCC TTGAGCGGGA CTGTGGTTGC GAGGGAGGGA CGAGAAAACA 000880
000881 CGCCTACGCC CTGCGTGCGC TGTGCTGACT ACCTCTCCAG CATGGAGGCT TCCAGATGAG CAGACACCCG AATCCCAGCG 000960
000961 GGAGCCCGTC AAAAATGGAG ATTTCTGCCG TCACTCTGGG ACTCTTAATT CGGTCCGTCT GGGGTGGGGC CCAGGAATCT 001040
001041 GCATTTCTGA TAAGGTCACC CGCTCCCCTC CCCCATTATT CCAGTGCAAA GAGGTCCTAG GCCCAGTGCC CATCAGCTCC 001120
001121 TCAAGACAGG AATTACTATA TCTTTTTCTG ACAACTGTTA ACTTTGTACA AGGTTAGCAA ATAAATCCAG GAATGAATGG 001200
001201 AATCTTAAAA CTCGTAAAAC AACAATGAAA GGTAATTCAC ACAAAAGATA CAAAATCCAA AATTGTCAAA AAAGATACAG 001280
001281 GGAAAAGTAA ACATCCATGT TATTCCTATA GTCCAGCCTT GCAATTCTCT CCACAAGCCA TTAGTGGTAA TGGTTTCTTG 001360
001361 GAAATATTTT CAGATTTATT TTATGCCCAT ATCAGCATTT TTAACATCTT TTGTCATAAA TATGTCGTAA ATAACAATGT 001440
001441 TATTGATACA TATCCTTTTA AAAACACAAT GGTAGTATGC TATACTGGCT TGTTTTACTT ATGAATATAT GTAGAGCTGC 001520
001521 CTCGTTCCAT TGTACGTATG TATGGTAATG ATTTAACAGT CCCTAATAGC TGGACATTTA GATTGCCAGT ATTTTCCTAT 001600
001601 TACAAACAAT GCATCAGTGA ACATCCTTGT TCTTTTATTA TTGTACACAA GTACAGGTAC ATCTATCTGT AGGATAGATT 001680
001681 CCTAGAAAGT TGAATTGCTG GTTCAAAGGT TTGTGCGTTC TTAATCTGTA CATTTTTTAA TATATATTGG CAAATTGCCC 001760
001761 CATAGA
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Predicted Small Protein

Name ENST00000565336.1_smProtein_935:1099
Length 55
Molecular weight 5761.5529
Aromaticity 0.0555555555556
Instability index 114.235185185
Isoelectric point 10.9313354492
Runs 7
Runs residual 0.0330623306233
Runs probability 0.0441491912081
Amino acid sequence MSRHPNPSGSPSKMEISAVTLGLLIRSVWGGAQESAFLIRSPAPLPHYSSAKRS
Secondary structure LLLLLLLLLLLLLLEEEHHHHHHHHHHHLLLHHHHHEEEELLLLLLLLLLLLLL
PRMN -
PiMo -