ENST00000565600.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000565600.1

Source

Gencode19

Same with

lnc-ZG16-2:1,NONHSAT141625

Classification

antisense

Length

1656 nt

Genomic location

chr16+:29756568..29759620

Exon number

2

Exons

29756568..29756706,29758104..29759620

Genome context

Sequence
000001 ACTTGAGCCC AGGAGTTTGA AGCTGCAGTG ACCCCAGATT GCACCACTGT CCTCCAGCCT GGGCAATAGA GCAAGACCCT 000080
000081 TTCTCAAAAA TGAAAAAGAA CATTCTGGAG AGACAGAGAA GCAAGAGGGA CCAGAAAGGA GATGGGCTCT TGCTATGTTG 000160
000161 CCCAGGCTGG TCTCAAGCTC CTGGCCTCAA GAGATCCTCC TGCCTCAGCC TCCCAAAGTG CTGGGATTAC AGGTGTGAGC 000240
000241 TACCACACTG GCCCCTGCCT CATACTTTTA ATTAACATAA GTCTCTCTCT CTTCAGACCA TTTAGCCCCC ATTTTGGTTG 000320
000321 GAAAATATCA GTGAGGTGAG GCTTGGGTAA CAAAAATGTC AAGCCTCTGA GAGGAGTCCA GGGTATAAAA ACAGGCGTGG 000400
000401 GCCTGTTTCC AAAACCCTGA CCATCCTCAT GTCTGTCCCT CTTTCCTGCT GCTGAGGGTG GGAGGAGCCT GGAGCAGAGT 000480
000481 GTGACAAGAT GTCATCAGGC TCTGGAGTCC AGGTGACTTT CTGAGATTCT CTAGTTTGAC TCATCCACAG ATGACAAAAG 000560
000561 TAAGGCTTAA AGAAAAGAGA TTTCATGACC AAAGTCGCAT GACCAATGTA TGTGTGGGTG AGCATGTAGT GGCCAGGGTG 000640
000641 GTGGAAGAAT AGATAGAAAT CCCTGGGCTG GGCGAGGTGG CTCATGCCTG TAATCCCAGC ACTTTGGGAG ACCGAGGCGG 000720
000721 GTGGATCACC TGAGGTCAGG AGTTTGGGAG CAGCCTGGCC AACATGGCAA AACCCCGTCT CTACTAAAAA TACAAAAATT 000800
000801 AGCCGGGCGT GGTGCCGCAC GCCTATGACC CCAACTACTC AGGAGGCTGA GGCAGGAGAA TCGCTTGAAC CCGGTGCAGT 000880
000881 GAGCCGAGAT CGTGCCATTC CACTCCAGCC TGGGCAACAG AGCGAGACTC TGTCTCAAAA TAAATAAATT AAATAAATAA 000960
000961 ATGAATGAAA AGACAGTCTC CGTCAGACTG CCCCATCCTG GTGGTTTTGA GCCCTGCTGG GAGGAGCTGG AGATGGAGAG 001040
001041 TCCGGGGGAA ACCGCCTTTG CAAAGAAAGA GATCTAACTT AACTGACTCC ACCTTGCTTC TAACCTCCAA GCTGTCTTTG 001120
001121 TTTATTCCTG GGCGTAGGCT GAACTAACTT TGGGAGAAAC TTAGTTTGTA GTTTATAGTT TAAACAAAGA CAGTAACAGC 001200
001201 CCTTTCCCAA AGCAGACCTT CTTGCCTGGG GACTAGACTA ACACTAGCCA TAGGATTAGA AATTATGGTT TAGGAGTCAT 001280
001281 GCAGCTGGAG GCTACAAGAT TCTGACCCTC CCTAAACTGC TCCTAACATC AGTGCTTGAG ATATTTTGCA GACCCTGCAC 001360
001361 TTGATGGATC AGCTGGCACC ACCCAGATCA ATAAACTGGC TCATCTGATC TTGTGGCCCC CACCCAGAAC TGACTCTGCA 001440
001441 AGAAGACAGC TCTGACTCCT GATGATTTCA TCTCTGACCA ATCTGCACTC CCAGATCCCA GCACTTTGGG AGGACCAGAC 001520
001521 AGGCAGATCA CAAGGTCAGG ATGAGAGGTG ACAGCGTGCT GGCAGCCCTC ACTCACTCTG GGCGCCTCCT CGGCCTCCAC 001600
001601 GCCAACTCTC CCTGCGCTTG AGGAGCCCTT CAGCCCGCCG CTGCACTGTG GGAGCC
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Predicted Small Protein

Name ENST00000565600.1_smProtein_683:946
Length 88
Molecular weight 9414.4168
Aromaticity 0.0459770114943
Instability index 61.0517241379
Isoelectric point 5.31903076172
Runs 13
Runs residual 0.0111658456486
Runs probability 0.026164173223
Amino acid sequence MPVIPALWETEAGGSPEVRSLGAAWPTWQNPVSTKNTKISRAWCRTPMTPTTQEAEAGES
LEPGAVSRDRAIPLQPGQQSETLSQNK
Secondary structure LLLLLLLLEELLLLLLEEEELLLLLLLLLLLLLLLLLLEEELEELLLLLLLLHHHHLLLL
LLLLLLLLLLLLLLLLLLLLEELLLLL
PRMN -
PiMo -