ENST00000565959.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000565959.1 |
Source |
Gencode19 |
Same with |
lnc-MIS18A-1:1 |
Classification |
intergenic |
Length |
1782 nt |
Genomic location |
chr21-:33632115..33633896 |
Exon number |
1 |
Exons |
33632115..33633896 |
Genome context |
|
Sequence |
000001 GTAATACGTG CTCATTCCAT CTTCAATGGA ACAAATGAAT GTTGCTGCAT CGAGCATCTG TTTACTCACA TCTTCATTCT 000080
000081 CTAACCACTC TATTGATTCT TTATCTTGAC CCGCAAGCAT ACTTACGTCT CATCTTGGTG ACAAAGAGCC CTCCCGTGGC 000160 000161 CCAGGCACCT CGCTGAACTG CTCTCTTATT TTTAACCGCA CTGACTTTGC CCACTCAACA CTTCAACTCT GGGCTTTTGG 000240 000241 TCCTCCAGGC ATCTTGCTGA AACTACTCTC TTGAAGGCCG CCAGTGAGTT CCTACAAAGT GTTACTGTCT GTCTGAAATC 000320 000321 CCTAAAATTT CCAACAATTT AAAATTGTTC TCCCCTTTAA CATTTTCTTC TTGATTGCCC GCATTTCTGA GCGAGGCATA 000400 000401 ATGATGTATG CAGGGGCTGG ATGCCATGGG GCCTGGGGTT TGTGGTAAAA TGTCGGTAAA GTAACCACAC AGCAAAAGGG 000480 000481 ATAGTATGGC CCTCATCTTA ATCTCTGCTG ATTATTTATG AATGGGCACG GGTGGGGGTT CATTATATCT GCACTTTTGA 000560 000561 GTGTGTATGG TTTATTTTAG GTCGTCTCAC TCTGTCGCCC AGGCTGGAGT GCAGTGGTGC CATCTCGGCT CACTGCAACC 000640 000641 TTCGCCTCTG GGTTCAAGTG ATTCTCCTGC CTCAGCCTTC CAAGTAGCTG GGAGTACAAG CATATGCCAC CACGCCCGGC 000720 000721 TAATTTTTGT GTTTTTAGTA GGGATGGGGT TTCCCATGTT GGCCAGGCTG GTCTCGAACT TATGACCTCA GGTGATCCTC 000800 000801 CTGCCTTGGC CTCCCAAAGT GCTGGGATTA TAGGCATGAG CCACTGCACC TGGCCTGTGT ATTGTTTGAA AATTTTTATG 000880 000881 AAACCAAAAA CAAACAAGTT TGCTTTCATC CTTGGGCATT GATGGCGTCC GACTTGCCCA GTGGCCTCCT GCCTCCTTGC 000960 000961 TGCTGCTTTG CCGGAGTTCA CCTTCCTCCT GCTTCTCCCG GGCTCTGCCT TTGCCCTCCT TTCTCTCTCT GCAGTCTCTC 001040 001041 TTGGCTACTT CCGCCCTGCC AGGATTTCAG TGATCATTCC TGTGTCTCTA ATTCCCACAG CCCTCAATTG TCTCCCCGGG 001120 001121 TCCCTGGTCC TGAGTTTCTA ATGATCTGCC GACATCCCCT GGATATGCCC TGTGTACTCT CTGTCTCACA CCTGACCCTT 001200 001201 TTGTATATAT ACAGTTCTTA CTTGTCCTTC AAGATCTTGC TTGAGTGCCA CTTCCTCCAG GAAGCCCTTG CTGATTTCTC 001280 001281 AGTCAGATGT CATTTCTCCC ACTTCATTAT TCTTAAATGA CTTCAGCATG GTCTGACCTT ATTACTTAGA TTTTGTATTC 001360 001361 TAGTTTTGTG GGAACTGTTC CTGGAATACT AGGGTTGTGT TTTCCAGAGA TCCAACATGT TGTGGGACCT TGTACACTGG 001440 001441 AGGCAATTCA TACTTTGTAG ACCAGTTATG ATGGTAAATG GAAAAATCTG AAAAAAAAAA AGCTGAGAAA AATGGTTCCA 001520 001521 CCAAAGTATT CAAAATTGCT TTTCATATTT CAGAATTGAC ATATAAGAGT AAAAAGAAAG TAACCCAAAC TGCAGTGGTG 001600 001601 CTGTGGGGCT AGCATAAAAT GTTAATCAGG TAAATAGGAA CTCAAAGGAA ATTTACCAAA TTGAGCTCAT TTACATGTGT 001680 001681 AATTACCCAT CTGTGATCAT TCTACTGTTC TATTTATTCT GTCTTTCTCC TCCCACACTG GGTTAAAAAT ACTTTGTATT 001760 001761 AAAGATTTTC TTCATAACCA AA |
Predicted Small Protein
Name | ENST00000565959.1_smProtein_566:784 |
Length | 73 |
Molecular weight | 7661.8007 |
Aromaticity | 0.0972222222222 |
Instability index | 56.1569444444 |
Isoelectric point | 8.94146728516 |
Runs | 14 |
Runs residual | 0.0535279805353 |
Runs probability | 0.0434552199258 |
Amino acid sequence | MVYFRSSHSVAQAGVQWCHLGSLQPSPLGSSDSPASAFQVAGSTSICHHARLIFVFLVGM GFPMLARLVSNL |
Secondary structure | LEEEELLLHHHHHLLEEEELLLLLLLLLLLLLLHHHHHHHHLLLLHHHHHEEEEEEEELL LHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTT TTTiiiiiiiii |