ENST00000565959.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000565959.1

Source

Gencode19

Same with

lnc-MIS18A-1:1

Classification

intergenic

Length

1782 nt

Genomic location

chr21-:33632115..33633896

Exon number

1

Exons

33632115..33633896

Genome context

Sequence
000001 GTAATACGTG CTCATTCCAT CTTCAATGGA ACAAATGAAT GTTGCTGCAT CGAGCATCTG TTTACTCACA TCTTCATTCT 000080
000081 CTAACCACTC TATTGATTCT TTATCTTGAC CCGCAAGCAT ACTTACGTCT CATCTTGGTG ACAAAGAGCC CTCCCGTGGC 000160
000161 CCAGGCACCT CGCTGAACTG CTCTCTTATT TTTAACCGCA CTGACTTTGC CCACTCAACA CTTCAACTCT GGGCTTTTGG 000240
000241 TCCTCCAGGC ATCTTGCTGA AACTACTCTC TTGAAGGCCG CCAGTGAGTT CCTACAAAGT GTTACTGTCT GTCTGAAATC 000320
000321 CCTAAAATTT CCAACAATTT AAAATTGTTC TCCCCTTTAA CATTTTCTTC TTGATTGCCC GCATTTCTGA GCGAGGCATA 000400
000401 ATGATGTATG CAGGGGCTGG ATGCCATGGG GCCTGGGGTT TGTGGTAAAA TGTCGGTAAA GTAACCACAC AGCAAAAGGG 000480
000481 ATAGTATGGC CCTCATCTTA ATCTCTGCTG ATTATTTATG AATGGGCACG GGTGGGGGTT CATTATATCT GCACTTTTGA 000560
000561 GTGTGTATGG TTTATTTTAG GTCGTCTCAC TCTGTCGCCC AGGCTGGAGT GCAGTGGTGC CATCTCGGCT CACTGCAACC 000640
000641 TTCGCCTCTG GGTTCAAGTG ATTCTCCTGC CTCAGCCTTC CAAGTAGCTG GGAGTACAAG CATATGCCAC CACGCCCGGC 000720
000721 TAATTTTTGT GTTTTTAGTA GGGATGGGGT TTCCCATGTT GGCCAGGCTG GTCTCGAACT TATGACCTCA GGTGATCCTC 000800
000801 CTGCCTTGGC CTCCCAAAGT GCTGGGATTA TAGGCATGAG CCACTGCACC TGGCCTGTGT ATTGTTTGAA AATTTTTATG 000880
000881 AAACCAAAAA CAAACAAGTT TGCTTTCATC CTTGGGCATT GATGGCGTCC GACTTGCCCA GTGGCCTCCT GCCTCCTTGC 000960
000961 TGCTGCTTTG CCGGAGTTCA CCTTCCTCCT GCTTCTCCCG GGCTCTGCCT TTGCCCTCCT TTCTCTCTCT GCAGTCTCTC 001040
001041 TTGGCTACTT CCGCCCTGCC AGGATTTCAG TGATCATTCC TGTGTCTCTA ATTCCCACAG CCCTCAATTG TCTCCCCGGG 001120
001121 TCCCTGGTCC TGAGTTTCTA ATGATCTGCC GACATCCCCT GGATATGCCC TGTGTACTCT CTGTCTCACA CCTGACCCTT 001200
001201 TTGTATATAT ACAGTTCTTA CTTGTCCTTC AAGATCTTGC TTGAGTGCCA CTTCCTCCAG GAAGCCCTTG CTGATTTCTC 001280
001281 AGTCAGATGT CATTTCTCCC ACTTCATTAT TCTTAAATGA CTTCAGCATG GTCTGACCTT ATTACTTAGA TTTTGTATTC 001360
001361 TAGTTTTGTG GGAACTGTTC CTGGAATACT AGGGTTGTGT TTTCCAGAGA TCCAACATGT TGTGGGACCT TGTACACTGG 001440
001441 AGGCAATTCA TACTTTGTAG ACCAGTTATG ATGGTAAATG GAAAAATCTG AAAAAAAAAA AGCTGAGAAA AATGGTTCCA 001520
001521 CCAAAGTATT CAAAATTGCT TTTCATATTT CAGAATTGAC ATATAAGAGT AAAAAGAAAG TAACCCAAAC TGCAGTGGTG 001600
001601 CTGTGGGGCT AGCATAAAAT GTTAATCAGG TAAATAGGAA CTCAAAGGAA ATTTACCAAA TTGAGCTCAT TTACATGTGT 001680
001681 AATTACCCAT CTGTGATCAT TCTACTGTTC TATTTATTCT GTCTTTCTCC TCCCACACTG GGTTAAAAAT ACTTTGTATT 001760
001761 AAAGATTTTC TTCATAACCA AA
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Predicted Small Protein

Name ENST00000565959.1_smProtein_566:784
Length 73
Molecular weight 7661.8007
Aromaticity 0.0972222222222
Instability index 56.1569444444
Isoelectric point 8.94146728516
Runs 14
Runs residual 0.0535279805353
Runs probability 0.0434552199258
Amino acid sequence MVYFRSSHSVAQAGVQWCHLGSLQPSPLGSSDSPASAFQVAGSTSICHHARLIFVFLVGM
GFPMLARLVSNL
Secondary structure LEEEELLLHHHHHLLEEEELLLLLLLLLLLLLLHHHHHHHHLLLLHHHHHEEEEEEEELL
LHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHHLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTT
TTTiiiiiiiii