ENST00000566570.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000566570.1 |
Source |
Gencode19 |
Same with |
lnc-SUMF2-2:1,NONHSAT120760 |
Classification |
intergenic |
Length |
4162 nt |
Genomic location |
chr7+:56560817..56564978 |
Exon number |
1 |
Exons |
56560817..56564978 |
Genome context |
|
Sequence |
000001 GGGGTCTCTA GTAACCCACC TGGTCTGACA CTGAGGAAAC ACCTACAGGC TGCTGATCCC ACAGTGAGGG GTGTGTGCCA 000080
000081 CCTGGGGTAT GGGCGCTCGT GAATGAGGGT CCCTGCTGAT CCCACAGTGA GGGGTGTTTC CTGCCTGGGG TATGGGAACT 000160 000161 TGTGAGTGGG GACCCCTGCT GCACTCTGTC CCTGTTGGTG CTCGCAGCTA TGGGTGTGGG CTGGCACAGA CAGGACCGAG 000240 000241 CCCTCCAGGG GCTTCCAGGG TTCTTGTAGG GCAGGAGGGG AAGGGTGTGG TGGGGGGCTT GGAGGGGTCT TGCCCTCATC 000320 000321 CCCTGCCCTG TTACTGGGGT GAGTCCAGCA CCTGCCCTGG GGCCCAGCTG GCCTGTTTTT AGAAGCTTCT TAGAGAAGGA 000400 000401 AGAGGAGAAG GAGAAGGAAG GCCTGGGGAG CAGGGATGGA GGGTCCTGGG CACTCCCCAC TATTTACTGT CTTAGATGGT 000480 000481 GACTCAGGAG GGGACCTGGT GCTAGAGACC ACCTTGGGGT CAGTGGTCAT AGTGCATCTT TCTGAGCTCA GCCATGGAGG 000560 000561 CCTCAAAGTG CTTCACAATC ACATCATCGT CCATAGCCCA GGTATGGGAC AGTGCATCTT AGGAAAGCTC CCACAGGACA 000640 000641 AACAGGAGAG CTTCAGGAGA GGGTCTAGGT TTGGGGCTGG GCATCAGGCC AGGAGGGGTC TCCTGGGAGG GGTCTGTGAC 000720 000721 TTCACCTTAT TTCCGCCATG GGCACCTCAC ACTAGGCAGT GCTGGGTCCT TTCTAGATAC CCCTGGGGTC CAGCTCTGCA 000800 000801 CAGGAGGCCA CTAATGGGGG AAGTTCCAGT CAGGGAAGAG CTTGCCACAC TCCTGCCTTT CATCTGAGTT GTGTCAGGGG 000880 000881 TAGGTTCGGT TTCCAGGAGG ACTCATGGTG CCCTGTCCAG TCCACCAGGC CTGGCTTGGT TTGGCCGTCC CTCTGGGTTA 000960 000961 AAGCAGAGGG TCCTGTGGAC AGTGTGAGCA CTGCCTTCGG GCCAGGTTTG GTGTGCTTGT GTGCTTCCCC AGCACCCTTG 001040 001041 GGCACATGGG GACAGGGTTC TGTGCACTTT CAATGCCGCA TGTGCCCTGG CTATGAGCAT GCACTTGCCC TGCAGAAGGC 001120 001121 AGATGTACCA GAGCCTGAGG ATGAGCTTGT GATGAGCTTG ACGTAGGGGT TTGTGGGAAC AGCAGGCATG GGAGGACCTG 001200 001201 GCCCTTCACG GTGGAGGGCT GGTGGCCTGA GCAGGGCCTA CTGGGGCCTC AGTCTGTGGT GCTGGGGGCC CCCTCTGCAT 001280 001281 GGGATGAGAC CTCCCCCAGG AGGCTGGATC AGATAAGGTC CTGCAGCTCC TTATGGGGGT GTTCTCATAT CCATCAAATG 001360 001361 TGACCCCTGA AAGAGGGGGC TCCCTGAGTG CTCTCCCAAG ATGAGTCCTG GCCCAGTCTG CCCAGGATGC TGGCCCTGAG 001440 001441 TCCCAGCCCC AGCCGTGTGA TGCCCCCTCT CAGGCAGGGC ATGGTTTGTG TGCCCTGCAG GGATCTGCCT CTGCCTCCTG 001520 001521 TGCAGAGGAG GGGAGCTGGG TCCTTCTGGA GGAGCCAGAC TCCTGGGCAG GGTCCCTGGA CTGGGTCTCC TGTGCACACT 001600 001601 TGTCCCATCA AGCAAGCACT GTAGGAGTCA GTTTAAGGTG GCAATCTGGG TGCACAACAT TTGCTTGTCT TCAAGGAAGG 001680 001681 AGCAGAGGTG TTCAGAATCC CCTGGACTGC CCTGAAAACC TCACTCTTCC AGGCCCCTCT GCAGACCCTT CCCAAGGCCA 001760 001761 GATCTCTAGG CAGTAGGCTG GGCTGTCACC CTCTTCTCTG AGACCCTACC CCTGTCCTGA GACCTCCCCA CTGCCCCTCA 001840 001841 GATGCCCCAT CCCTGCGGAT TGCCCACCTC CCCTGGCACC CTCCATGCCC CACACGCCTT ACTTGATGCT GCAGCGCTCT 001920 001921 CTGAACATGG CATGGCTTGT GAAGGTGTGG CTCACATCTA GGTCATTCTG GTGCATGTTC AGAGGACATC TTGGCCTGCT 002000 002001 CCATTTTCTA TAGAGCAGGG CCAAGCCTCA GAACAGACAC AAGAGTCACT GTCAAAACTG CTGTCATAAA ACAGACATTC 002080 002081 TGGAAGGGAA GGAGTCTTTT TCTGCAGATA CTTCATTTCC AAAGCCAGGA AAGTCATCAG CACACAGCTC ACCTGTGTTG 002160 002161 CCCATGCCAC TGTCTGCCCA GGATGTGTGA CTGACCCCTT CCGCCCCTTT GGGGTTGACT TTCCCTCCAT CTGGGTAGCT 002240 002241 GGGCTTCTGA CACAGTCTGG CCTATGCATC CTGCTCTAGC TGGGAGTGGA AGGGCCAGAC CTGGTGTTTC CCTGGGTTCT 002320 002321 TGGCCTTTGT CTTCTCGACA TTCAGTAGGA GTGACCGTGC TGGGCCCCAG ACCTCTGTGA GGATTCCTTT TTAGACCCAA 002400 002401 TGAGACATTT GTGGACAGAA GATGCTCTGG TGAGACAGAC CTTAGGGTGA CTCTAAAGGG GATCTGAGCC TAAGGATTCT 002480 002481 GGAAGTTTCC AGTCTTTGGC TCCACAGTTC CTCAGGAGAG GTTCAGTCTG CCTAGGACTG GGCCTCCCTT TTCACGAAGA 002560 002561 GTGGGCAAGA GCTCAGGTTG TGAACTCTGA TCTGGATTTA TTCCTTCCTA TGGGATGTCC AGAAGGTGTT CCTGTTCCTG 002640 002641 GCTTAGAAGC AGACCATGCC AAGGCATCAG ATTCCTCCCA GCAAGGTGAT GCTTGCAGGG ATGGGCAGGA GGGCTAGGGA 002720 002721 CCAGGCCTGT TGTCCTTTCA GTGAGGAAAG TGTGTCCTGC CCTGTCTGAG AGGCAGGCAG CACCAGGAGG CAAAAATGGG 002800 002801 CTCCTGTCCT AAACCCTGAA GAGCAGTCAT GGGGGACCCT CACTCACAGC TGTGCCTTCT TGCTGTTCCT AGATTTATTC 002880 002881 CAGTTAAGCA TTTATAGGCA TTTATCTGTG TGTCTGATGC CCTGACGTTT TTGCTGTAGG TAAGAAGTGA TGGAGTGAGC 002960 002961 TGAGCTGCCA GGCTTCCTGG AGTGATTCTT GGATGCTGGG TCACGTGGTT AGGGGCCCTG ATGGGACTGA ACTGGAAGGA 003040 003041 ACCAGAATAG GACAGAACCA AGCCCCTGAT TAGTGGGCAC TGGTGGCCTG GCCTCATGAC CACAGGACAC ACTGTTCCCA 003120 003121 GGGCACAGAC ACCCTGGGCT TTGGTTGGGT CTTGGCCTCC AGGTAGGGCC CTGTTGGGCA GCGGGCAGCA ACTCCTGAGA 003200 003201 CACTACTGTG ATTCTTGGTG GTGGCTGTGG TAAAAAACCT GCAGGGCTAG AGTTTGGGGT GAGATTCAGC AGTAACTGTG 003280 003281 GCCTCTCCTA GTGACAGTAT GTCACTCCCA CTCCCAGCAC GCATGCCCAC AGGCCACGGC CTCCACATCA CAAACCCCCC 003360 003361 ACCAAGTTGC CCATCTATGG AGCAGCTCCC ATACGGCAGG GTCAGGCTCT TACCTCCACC TCCAGGGCAC AGACAGGGGG 003440 003441 AGCTCTGTCT CACTGTAAGG CAATGAGGAG AGTTGAGGGC CCAGACCAGG CTAGGGGCCA TCCCCTTTCC CGAGCAGGCC 003520 003521 TCAGGGAAGG ACCAGCCCCA TTCCCATCTG ACCTAGGTCT TAGCCCAGGA GCCTGCATAG GGAAGAAAGG ACAGACAGGG 003600 003601 CCTCCTTACT GGCTGACACT CAGGAGGGGC TGGGGCAAGA GAGCAGAGGG AGCGCAGGGC CAGGCAGGGG CTGCTGAGGA 003680 003681 TCCATGGGAG CTCAGGGTGC ACAAGGGGGC TGCCCTTCCT GGGCTGCAGG CAGCATCCCC TATGGGAGCT GAGAAAGTCC 003760 003761 AATCCTGAGA TGGGACAGTG CTGCCCAGGG GTGTGTGGCT GGGCCCTGAC AACAGTCTCC CCAAAAGTGA CCACATCACC 003840 003841 AGGCTCAGTT CCAGGAAGGC TGAGAAGTGC CCAGTACACT GAGGATGCAC CTCAGTTACA TAAAATAAAT GAAACTGGAG 003920 003921 TACTAACGTA CAGTTTAAAG GTTATAGTTA CTATTTTTAT ATGATATACT AGTAATTTTT GAATAGGGTA AACTTTAGGT 004000 004001 GTTTTGACAC CAAAAGAAAA CTACATGAGT TCATGCATGT GTTAAATTGC TTTACTGTAG TAATCATTTA CATGTATATG 004080 004081 TATATATGAA TATAATTATG GGCTCATTAA ATTTAAATAT TATAAATAGG TGACAAAGAA TAAAGTTAAC TGGAAAACTG 004160 004161 TG |
Predicted Small Protein
Name | ENST00000566570.1_smProtein_3095:3232 |
Length | 46 |
Molecular weight | 5204.9036 |
Aromaticity | 0.155555555556 |
Instability index | 45.7622222222 |
Isoelectric point | 9.49346923828 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0112044817927 |
Amino acid sequence | MTTGHTVPRAQTPWALVGSWPPGRALLGSGQQLLRHYCDSWWWLW |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHLLLLHHHHHHHHHHLLEEEL |
PRMN | - |
PiMo | - |