ENST00000566699.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000566699.1 |
Source |
Gencode19 |
Same with |
lnc-TBXAS1-2:1 |
Classification |
intergenic |
Length |
2380 nt |
Genomic location |
chr7+:139877061..139879440 |
Exon number |
1 |
Exons |
139877061..139879440 |
Genome context |
|
Sequence |
000001 GAGGCCCCGT GAGGACACGC GCGGTGGTGG CGGTGGCGGC GGGCGCGCGG CCGCAGCCGG AGGAGGACGG CGGGAGCGTG 000080
000081 CGAGGAGCTG GCTCGGTTAT TTCGGAGCGA GAGCCGAGGC CGGGGGAAGT TCCTGCGGAG TGCTCAAGGG CAGAAGAGGT 000160 000161 GCCGCGTCCC GAAGAGGGGA AGCGGAGAAG TTTGCTGCTG CCCGGGTCGC CTCGCGACGC TGAGAGAATC GCCCAGCCCT 000240 000241 CCGCAGCCGC CCAGCGAGAA CCGGAGCTGC GGCCCCGCAC CGGCGTGAGT CCAGCTGAGC TGACACGCCG AGCCGGTTGT 000320 000321 GCCTTTCCGA GGGAGGAATG TGCCGTGGAA TCCAAACTTT GGAAAACGTC CCACCCGAAT TCCCAGCGAG CAGCAAGGAG 000400 000401 ACCAGAGCGT CGATGGAGCC ACCGTTAGTT GCGGGAGGGC TGTCCCCAAG AGGAATTCAT CACTGTCGTC CGCTGGGAGG 000480 000481 GACCAACCTT GAAATGGGGT TGGTGGAGAG AGGGATAGAG AAGAGCCGGC GTGCTTATAA ATAACAAAAC TTAGCTATGA 000560 000561 ACCCTTCCGA TTCCCAAGTG GGGAAGATGG GGTAAAATTC TAAGTGACTT CTCGCTCCGA AGAGGGATAC CACAAAAAGC 000640 000641 GGAGCGCAGG GTACTTGGCG TATAATAAGC CATCAATAAT TTATGGGTGA AATTGAGAGC CAAATATAAG ATGATAAACT 000720 000721 GAAGAATAAA AACAGCTGAC AAATACTGTA TAGAAAAGAT TGCGTTGGAA TCATAACTGT GGATTGGAAG TGATGTTAAG 000800 000801 GATTATTGGA TTGAGTATTT GTAGCTGAAT TTCTGCTGGC ATTTCTATCA GTGGGGAAAG CCCTCACAGC TCCATAGGTA 000880 000881 ATTTTTGTTA GGGGAGGAAG AAGTGTTGTT CTGTCACCCA CCCCCAGGCA AAGAGTCGCT GATCTAATTC TCCATTTCTT 000960 000961 TCTTTCTTTC CTTTCTTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCCTCCCT CCCTTTCCTT 001040 001041 TCCTTTCCTT TCCTTTCTTT CCTTTCTTTC TTTGAAACGG AGTTTCGTTC TTGTTGCCCG CGCTGGAGTG CAGTGCAGTG 001120 001121 CTGTGATCTC GGCTCATTGC AACTTCCACC TCCCGGGTTC GAGGGATCCT CCTGCCTCAG CCTCCCAAGT AGCTGGGATT 001200 001201 ACAGGCGCAC GCCACCGCAC CCGGGTAATT TTGTATTTTT AATAGAGACG GGGTTTCACC ATGTTGGCCA GGCTGTTTGA 001280 001281 ACTCCTGACC TCAAGTGATC CGCCCGCCTC GGCCTCTCAA AGTGCTGGGA TTACAGGCGT GAGCCACCAA GTCCTGCCTA 001360 001361 ATCTCCTTTT TATAGTTGAG GAAAGCTAGT AACTTGACTG AAGTCTCATA TATTAGAGCT GTAACTGAAG TTTTTAAGTG 001440 001441 TCTCAATTCT GCAACTATTC GTTTTTCTAT CACATCACTG TTTGGCATAT ATATAGCGGG AAAAGGAAAG GCTGGAAATT 001520 001521 AGTTGACCAC ACACTGATTA AGCTTGAAAC ATATTTCTAC TGGAGAAAAA AAGGTACTGT AATTTTGGCA TAGGCATCAC 001600 001601 ATATTGCTGG AGTGGAAAGA CCCATGCACT CAGGTCCTGC TTTCTATAAT CTGTGACCTC GGGCCAGTCA CTCCATTTCT 001680 001681 CCTGAACTAG ATCACTGATG ATCTGTTGAA AGAAAAAATA TGGCTAGTAA TGCCTTAATT ATCTCACAGA GGTTTTACAT 001760 001761 GGAGCAAAAA GACAATGTAT TTTTAAATGT ACTTTGTTGA AGGTGTGTGT TGTCGAGACA ATACAGCAGT GAAGAGAAGG 001840 001841 CATGCAAAGC TGTCTTGTTG GAGTCTGGCT AAAGAGCACC AAAGCAGCCT GTTGTGGGAT GTCCTCTGGG GGCCACCTGG 001920 001921 ACTTGCTATG TTAACATGGA GGGACTAGGC AGGGGTATGA AGAAGGAAGC CCAGCAGAGC AGGAGGCAGC AGCAACAATG 002000 002001 AGAGATTGGT TATCCATATG ACTTGGATCT GTGTCCCCAC CCAAATCTCA TGTTGAATTG TAATCCCCAA TGTTGGAGGT 002080 002081 GGGGACTGGT GGGAGGTGAC TGGATCATGG GGGTGGATTT CTTATGAATG GTTTAGTACC ATCCACTTTG TATTGTCCCC 002160 002161 GTGGTAATGA GTGAGTTCTT AAGAAATCTG GTCATTGAAA AATATGTGGC ACCTCCTCCC TCTCTCTTTT GCTCCTGCCC 002240 002241 CGGCTATATG ATGCAATTTG TCTTCAGCCA TGATTGTAAG TTTCCCGAGG CCTCCCCAGA AGCTGAGCAG ATGCCAGCAT 002320 002321 CATGCTTCCT GTACAGCCTG CCTTCCATGA GCCAATTAAA CTTCTTTCCT TTACAAATTA |
Predicted Small Protein
Name | ENST00000566699.1_smProtein_1841:1933 |
Length | 31 |
Molecular weight | 3099.7134 |
Aromaticity | 0.0333333333333 |
Instability index | 77.3666666667 |
Isoelectric point | 7.68060302734 |
Runs | 7 |
Runs residual | 0.0310810810811 |
Runs probability | 0.0260176142529 |
Amino acid sequence | MQSCLVGVWLKSTKAACCGMSSGGHLDLLC |
Secondary structure | LLLEEEEEELLLHHHHHHLLLLLLHHHHLL |
PRMN | - |
PiMo | - |