ENST00000567141.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000567141.1 |
Source |
Gencode19 |
Same with |
lnc-CHRNA3-1:1,NONHSAT047577 |
Classification |
antisense |
Length |
2154 nt |
Genomic location |
chr15-:78881465..78883618 |
Exon number |
1 |
Exons |
78881465..78883618 |
Genome context |
|
Sequence |
000001 GCCCCAGCCT CCCGAGTAGC TGTGACTATA GGCATGTGCC ACCATGCCCA GCTAATTTTT GTATTTTTAG TAGAAATGGA 000080
000081 GTTTCACCAT GTTGACCAGG CTGATCTCAA ACTCCTGACC TCAAATGATC CACCCACCTC GGCCTCCCAA AGTGGTGGGA 000160 000161 TTACAGGCAT GAAGCCACTG CGCCCAGCCT AAAAGAACTT TTGATAACTC CATTAACTGT TATAATGGAG TTCTGCCTAC 000240 000241 AGATTATCAC AATTTAGAAA CAAAGTTACT GAAGACAAAA TTAAAACAGT TCACCCACTG CCCTCACCCC AAGAAATTAA 000320 000321 AACAATTCAT CAGGTCAGAG CCAAGAAATA TGGCAGGATT ATTCCTTAGA ATATAACACT AAATTTTCTT TAGAGTTATC 000400 000401 CAAGATGCTG ATGGGGGAAG TGGAGAAGTG AGATTTGTGT AAATGCCCCA TTTTGCAGGT GCTTTAACTG AAACAAGCCT 000480 000481 TAGTAAAGAT CTTTTATAGA AAATATGTCA ACAATTCTGG CCCTCAATCT ATGCTTAGTC TTACTTAAGG GTCATGCTGT 000560 000561 TTACTCTGCC AAAATTAATG AAAGTAACTT CTGAACTTAA AATGGAAGAA GATCTGCATT TGTAAATACA CATCACAGAC 000640 000641 CTCACGGACA TCATTTTCCT TCATGATGTG TCTTGTAATG TAGCGAATAG AATCGAGCGC AGCTTCCAAT GTGTTTCTAG 000720 000721 AAGATTTTGG TCCACTACCA CTCTCAGTTT CCTCTTTCTG AGTGAAGTAC CTGTCTACAT GACTTCTCAT GCAAAGCAGT 000800 000801 TTGGGAAGCG TGTGAAGAAA TATCTTGCGG ACCAAAGGCG CCATGGCATT ATGTGTTGAG GAAGAACGAT GATGAATGTT 000880 000881 GATAGCGAAG ACGGTTACCA TAATTGACAG TGTCACAAAA ATCATGGTAA ATACCAGATA CTCTCCAATT AGAGGTATGA 000960 000961 CTTTTGAAGA TGATGGTATG ATCTCTTCAA TAACCAGAAG GAAGACAGTC AAAGACACAA GTACTGAAGT GCAGAGACAA 001040 001041 ATCTTTTCAC CTTCATTTGA AGGAAGATAG AAGACAAGTA CAGTTAAAAA TGAGAGCCCA ATACAGGGTA TTATAAGGAA 001120 001121 CAAGGTATAA AAGAGAGGCA GGCGCTTGAT TACAAATGAG TAAGTGACAT ACGGATACCA GCAACAGCTG TCGGTTCTGT 001200 001201 TTCCTTTGCT CCCTGTTGCA CTCACAATCT CCCATTCTCC ATTATCAAAA AAATCTCTCT TGTCTACATC TTGGTCCTCT 001280 001281 AGAATTATAT CAACCTGTGA TCCATCATAA GTCCAAGAAC CAAATTTCAT GGAACAGTTC TGAAGGTCAA ATGGGAAAAA 001360 001361 CGTGACATCT ATGGTACAGG AACTTTTGTA GTTTGCCGGT GGAGTCCAGG TGACAGTGCC ATTGTACCTG ATGACTGTTT 001440 001441 TCGTACTGGT CCCTTCAAAA CGTCCATCTG CACTAAAATA CACACATATA AAATAACAAT GCAGAAATTA AACAATGCAC 001520 001521 ATGAATTGTA TTAATATAAG CCTAATATAA AAGCAGGCCT ATCATTGATT GCATGAAATA ATTTTTAAAT TACTATACTT 001600 001601 CAGATAAGAT ATACGTGCTA CATAGGGACC CTGCTCCAGG AATATCTTCC TTAAATATCT AACTCTACTA GAACTGAACC 001680 001681 CCTTCTTCTG CATCTACTCC AGAACTGACA AATTTTCACA GAAGCCTGAG ATTCTAATGA TTGAAAAGAC CTCACCTTAC 001760 001761 ACACAGAATA GACTCAGGCT ATTGACACAA TGGGCACGCA TACAGCCAGA ACCTGAATCC ACACTCCTAG ACTCCCTCCA 001840 001841 CAGTGCTCTT CTTCCTTCAT CGCAAATACT GGCCGTTTTT TACTTTGATG GGGAAAGACC ATGAACACCA AGCTGGGCAT 001920 001921 GACCCTGAAA AGCAGCTATG CCTCTCAAGC TCTCCCACCA AGTGAATTCA TATATGAGAA AAGTCTAGTA TAGAATCCAT 002000 002001 ATACTAGGAA AGCACACCAC CAACATAAGA TTTCTTTAAA ATGTTGCTGT CTTCAAATTC ATGTGGCTTT TGCACACTAT 002080 002081 TCTGTAATAT ATCCATGTTT AATATAAAAA TGTTTTCAAT TACTGAAAAT AAAATGATGC TCCAGGAAGC TGCA |
Predicted Small Protein
Name | ENST00000567141.1_smProtein_875:1069 |
Length | 65 |
Molecular weight | 7285.3617 |
Aromaticity | 0.0625 |
Instability index | 41.45 |
Isoelectric point | 9.81048583984 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0386489430607 |
Amino acid sequence | MLIAKTVTIIDSVTKIMVNTRYSPIRGMTFEDDGMISSITRRKTVKDTSTEVQRQIFSPS FEGR |
Secondary structure | LEEEEEEEEEELLEEEEEELLLLLLEEEEEELLLEEEEEEEEEEEELLLHHHHHEEEELL LLLL |
PRMN | - |
PiMo | - |