ENST00000567141.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000567141.1

Source

Gencode19

Same with

lnc-CHRNA3-1:1,NONHSAT047577

Classification

antisense

Length

2154 nt

Genomic location

chr15-:78881465..78883618

Exon number

1

Exons

78881465..78883618

Genome context

Sequence
000001 GCCCCAGCCT CCCGAGTAGC TGTGACTATA GGCATGTGCC ACCATGCCCA GCTAATTTTT GTATTTTTAG TAGAAATGGA 000080
000081 GTTTCACCAT GTTGACCAGG CTGATCTCAA ACTCCTGACC TCAAATGATC CACCCACCTC GGCCTCCCAA AGTGGTGGGA 000160
000161 TTACAGGCAT GAAGCCACTG CGCCCAGCCT AAAAGAACTT TTGATAACTC CATTAACTGT TATAATGGAG TTCTGCCTAC 000240
000241 AGATTATCAC AATTTAGAAA CAAAGTTACT GAAGACAAAA TTAAAACAGT TCACCCACTG CCCTCACCCC AAGAAATTAA 000320
000321 AACAATTCAT CAGGTCAGAG CCAAGAAATA TGGCAGGATT ATTCCTTAGA ATATAACACT AAATTTTCTT TAGAGTTATC 000400
000401 CAAGATGCTG ATGGGGGAAG TGGAGAAGTG AGATTTGTGT AAATGCCCCA TTTTGCAGGT GCTTTAACTG AAACAAGCCT 000480
000481 TAGTAAAGAT CTTTTATAGA AAATATGTCA ACAATTCTGG CCCTCAATCT ATGCTTAGTC TTACTTAAGG GTCATGCTGT 000560
000561 TTACTCTGCC AAAATTAATG AAAGTAACTT CTGAACTTAA AATGGAAGAA GATCTGCATT TGTAAATACA CATCACAGAC 000640
000641 CTCACGGACA TCATTTTCCT TCATGATGTG TCTTGTAATG TAGCGAATAG AATCGAGCGC AGCTTCCAAT GTGTTTCTAG 000720
000721 AAGATTTTGG TCCACTACCA CTCTCAGTTT CCTCTTTCTG AGTGAAGTAC CTGTCTACAT GACTTCTCAT GCAAAGCAGT 000800
000801 TTGGGAAGCG TGTGAAGAAA TATCTTGCGG ACCAAAGGCG CCATGGCATT ATGTGTTGAG GAAGAACGAT GATGAATGTT 000880
000881 GATAGCGAAG ACGGTTACCA TAATTGACAG TGTCACAAAA ATCATGGTAA ATACCAGATA CTCTCCAATT AGAGGTATGA 000960
000961 CTTTTGAAGA TGATGGTATG ATCTCTTCAA TAACCAGAAG GAAGACAGTC AAAGACACAA GTACTGAAGT GCAGAGACAA 001040
001041 ATCTTTTCAC CTTCATTTGA AGGAAGATAG AAGACAAGTA CAGTTAAAAA TGAGAGCCCA ATACAGGGTA TTATAAGGAA 001120
001121 CAAGGTATAA AAGAGAGGCA GGCGCTTGAT TACAAATGAG TAAGTGACAT ACGGATACCA GCAACAGCTG TCGGTTCTGT 001200
001201 TTCCTTTGCT CCCTGTTGCA CTCACAATCT CCCATTCTCC ATTATCAAAA AAATCTCTCT TGTCTACATC TTGGTCCTCT 001280
001281 AGAATTATAT CAACCTGTGA TCCATCATAA GTCCAAGAAC CAAATTTCAT GGAACAGTTC TGAAGGTCAA ATGGGAAAAA 001360
001361 CGTGACATCT ATGGTACAGG AACTTTTGTA GTTTGCCGGT GGAGTCCAGG TGACAGTGCC ATTGTACCTG ATGACTGTTT 001440
001441 TCGTACTGGT CCCTTCAAAA CGTCCATCTG CACTAAAATA CACACATATA AAATAACAAT GCAGAAATTA AACAATGCAC 001520
001521 ATGAATTGTA TTAATATAAG CCTAATATAA AAGCAGGCCT ATCATTGATT GCATGAAATA ATTTTTAAAT TACTATACTT 001600
001601 CAGATAAGAT ATACGTGCTA CATAGGGACC CTGCTCCAGG AATATCTTCC TTAAATATCT AACTCTACTA GAACTGAACC 001680
001681 CCTTCTTCTG CATCTACTCC AGAACTGACA AATTTTCACA GAAGCCTGAG ATTCTAATGA TTGAAAAGAC CTCACCTTAC 001760
001761 ACACAGAATA GACTCAGGCT ATTGACACAA TGGGCACGCA TACAGCCAGA ACCTGAATCC ACACTCCTAG ACTCCCTCCA 001840
001841 CAGTGCTCTT CTTCCTTCAT CGCAAATACT GGCCGTTTTT TACTTTGATG GGGAAAGACC ATGAACACCA AGCTGGGCAT 001920
001921 GACCCTGAAA AGCAGCTATG CCTCTCAAGC TCTCCCACCA AGTGAATTCA TATATGAGAA AAGTCTAGTA TAGAATCCAT 002000
002001 ATACTAGGAA AGCACACCAC CAACATAAGA TTTCTTTAAA ATGTTGCTGT CTTCAAATTC ATGTGGCTTT TGCACACTAT 002080
002081 TCTGTAATAT ATCCATGTTT AATATAAAAA TGTTTTCAAT TACTGAAAAT AAAATGATGC TCCAGGAAGC TGCA
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Predicted Small Protein

Name ENST00000567141.1_smProtein_875:1069
Length 65
Molecular weight 7285.3617
Aromaticity 0.0625
Instability index 41.45
Isoelectric point 9.81048583984
Runs 12
Runs residual 0.03890625
Runs probability 0.0386489430607
Amino acid sequence MLIAKTVTIIDSVTKIMVNTRYSPIRGMTFEDDGMISSITRRKTVKDTSTEVQRQIFSPS
FEGR
Secondary structure LEEEEEEEEEELLEEEEEELLLLLLEEEEEELLLEEEEEEEEEEEELLLHHHHHEEEELL
LLLL
PRMN -
PiMo -