ENST00000567534.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000567534.1

Source

Gencode19

Same with

lnc-RP11-327F22.5.1-2:3,NONHSAT142451

Classification

intergenic

Length

1171 nt

Genomic location

chr16+:50918120..50934962

Exon number

4

Exons

50918120..50918233,50918393..50918658,50927572..50927773,50934374..50934962

Genome context

Sequence
000001 CAGTGCCCAC TTTGTTCATC TCTGCTCACT GGGGGAGCCA GGACACGGAT CCAGGTTTTC TGACTCCAGG TCTCAGGCTT 000080
000081 GCTCCATAGC GCCACCTGCT GGTGACGGCA ATCGGTAGGC ACCCAAATCA AGACTCAGAT TTCCTCATCT CAGAAGTTGT 000160
000161 CCACTTCTTC TCCGACCTCC ACGGTAACTC GGAACCACAC CGTGGAGTTA TCCCTGTGTC CTCTTTCTCG GAAGTTCCAC 000240
000241 ATCCAACCCC TCAGCAGGTC TCAGCGGCAC TCTCACCACC TCCTCTGCTC TGTTCCTGTT TCTCTTGGAT GGTCGAATGT 000320
000321 TTCCTAAGGA GTGTCTGCTG CTTCACGCTT GCCCCCTGGA GTGGCATCTA AAAGGTGCAG GATACCCTAC AACTAACAGG 000400
000401 CATGATGCCA TCAAGACATC TTGAGCCTGG CTACCTCCCG TGGCCTGTAT TTTGTCCACA GGAAACTCGC GCAGTCTCAC 000480
000481 TACAGCAAAT TGAGGTGGTA TGGGGTGCCT GCTGCTGCCT CTCTCTTCAC CTTTCCACAG AGGGCTGCCC CAGCCTGACT 000560
000561 CCCACTTCCA GAGTTTCTCC AGCCAGGAGA ATCCTGAAAT CTCTGTAAAT AAGCAATCCA GGAGCCAGAG AATCATGGGA 000640
000641 TCTCATATAA ACAAATCATC AAGGAAAAAC ACAGCCAGAG TCTCCATTTG GTAAACCTCC GTGACTGGGG ATCCCCGGCC 000720
000721 ACCCAGAAAG CAGTATTGCC TGCCATGCAT GTCATCACTG ATTTTTACTG CTGCAGCAGA CTCCGTCAGA CCTGCCTGCT 000800
000801 GCTTCAGCGA ATTGTTCAGT GCACACCACC AGCTACCTGC TGTAAGCATT CACACTCCTC TACCTGCCTG GCAGCATTTC 000880
000881 TCAGCTGAAC ACAGGCCAGG CCAGAAGTGC CAGGGATTTA ATGCCCTTAG AAGTAGCTCT CTACCAATGA CAAATGGAGC 000960
000961 TGGTGGATAC ATTCTCAGCT TCCTCCCCTC TCAGGTGGAA CAGCCCTGAG ATGTGCTCTA TGCAATCTCC CACAAGTCCC 001040
001041 CAGCAGGCTC AAGCTCCCAT TGTCCAACCC TGGTAACCTG CTCATTGACA CCCCTGTCTT GCCTTCCCTT CCTGGCCTCA 001120
001121 CTTTCTCACT CTCTTACTGT TGCCTCCTGA GATCGCATCC AAAATAAATG A
[back to top]

Predicted Small Protein

Name ENST00000567534.1_smProtein_401:607
Length 69
Molecular weight 7565.8434
Aromaticity 0.0588235294118
Instability index 90.95
Isoelectric point 8.39630126953
Runs 10
Runs residual 0.00655802861685
Runs probability 0.0202967673556
Amino acid sequence MMPSRHLEPGYLPWPVFCPQETRAVSLQQIEVVWGACCCLSLHLSTEGCPSLTPTSRVSP
ARRILKSL
Secondary structure LLLLLLLLLLLLLLLLLLLLLLEEELHHHEEEEELLEEEELLLLLLLLLLLLLLLLLLLH
HHHHHHHL
PRMN -
PiMo -