ENST00000567780.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000567780.1

Source

Gencode19

Same with

lnc-SMUG1-6:4

Classification

intergenic

Length

2816 nt

Genomic location

chr12-:54375293..54378108

Exon number

1

Exons

54375293..54378108

Genome context

Sequence
000001 GGCACCCGAT CCCCGACCCG AGAGCTGTGG CCTGGGCCTG GCAGGGTGGG CGGCTCCTGG GTCACCATCT CAGGGGCCCA 000080
000081 CAAGGCTTTG GCCTTGGAGC CGGTTCTGCT GCTTTACTTC AGGCCCTGGC GGTCCTCGCT TTCCGCTTGA CCTTGCCCCC 000160
000161 GCTAAAACAG GGAATATTCC GGGAAAGAAA GAGGGAACCT GCGGAGCCTC GGTCAGTTTG GAGGAGTCAC GTATCACACG 000240
000241 GGAAACCAGC ACACAAGACG CAACAAAACC CGACCCAGAG AAGCGTCCTT TACAGAGCGC ACGGGCTGGG AGCATGTTTG 000320
000321 AAAGAAGACA GACCAGTCTA TTTTTGTGGT TGTTTTTAAA TAAAAGGAAG AAATAAGGGG AACCGTATGT TTCAAACAGT 000400
000401 TATTTCCGTT TCTCCATCGC CTTCTTCCAA AGCGAACTAA ACTCTCCACC CCTTCCTCAG GAAACGGAAT CTGGAGAACA 000480
000481 ACTTGTCTTT CCTGTCGCCC CACATTTTTC CTTGGACAGA GCCTAGGGTT CAGACTTTCC GAAGGGCTGG AGTTTGGCGG 000560
000561 GGAAAGGACT GGAGCCCAGC GCCCTGGAGT GGAGGAGTGA GGAGGCTAGA CCGTTTCTAA GGAGGCCCAA GCCCGCTGCG 000640
000641 GCTAGAAGAC CGCAGAAAGA AATCCGCCGA ATTTCCCCAT CCAGGGGTGG AGAGAGAAGA CGCAGGGGTT CCTGAACCTC 000720
000721 CGGAAAACTG GAAGGAAATG TGGAGTGTAT GATTTGCTTG CAGGACCGGC CAGGGGAGAT TTGAAATGGT TTTGTGTTTT 000800
000801 CATATGCAGG GTCACCGTGG CCTCAGCATG GGGGTTATCC AGGGCAAGGT TAGGCTGTTT AGGCCCCAGA CTTGGGACAG 000880
000881 TCCGGGCAGC AGTCAATCCA GGGAGCCATT TGTCCCACCG CCCATCCCGC GGGAAACGGG CGAGACTTTA TGGCCACTCT 000960
000961 GTTTGTATTA TCTGCATTAG TCTTTCCCCA CCAGTTTGAT CGAAACCGTT CCCTTTTACG AGGACCCAAC GAAAATTTCC 001040
001041 CGTCATATTT ATCAGCCAGG GATAAAAATT TAGTATGGGA ACTGATATTT CCTCATTTAT GGGACGATGA AATTAAATAC 001120
001121 CAAAGCAATT GAGAATTATA TGGCTTTGGG GGTTCCCTCC CCCCTCTTTC ACGTCTCCTT TATTTTCCTG CCTGGTGTGC 001200
001201 TTTTCCCAGG AATTTAGCGT CCCAGTTCCC TACCCTTACC CCCCACTTTG GAGTCTGGTG GGTCCTTTTC CCCACGGCCA 001280
001281 AGTGGCCCTT GGCCACCTCA GCCTTTTCTT TTTTTTTTTC TCTGGGTGTT AGTAGCTGGG GGCCAGGACA GTGCTACCCG 001360
001361 AGCCTCTGCC CAGGCCAGCC AGGACAGGCT GGGATCAGAG AAAGGTTTCC AGGGAAGAGC CGCAAAGGGT TTGAGCCCAG 001440
001441 CCTGGGAGGG GGTGAAGGAG TCGGCAGGAA AGGGTGAAGG AGATAAACTT CAGACAAGCC CCAAGGCGTA GCCTGGGGAA 001520
001521 CCAGCAGACA GGGAGCAGAC CCATCGGCCT CAGGGGTCCC ACCACCCAAC CTCTTTCCAA GCCCACCTCT CACCTTAGCC 001600
001601 AAGGGAGAGG ACAGAGTCGC TTCGGAATTA TCGCCATCAT TAATGAAAAT AATACTCCAG GGAGGAGCCT CCCGCCTCGA 001680
001681 CTCCCACCTC CTCACAAGAC AGAATAGTGT TTAAAGTTGA AATAATTAGA AGTATGATAA ACACGGCCGA TTAATGAAAA 001760
001761 AAGAAATCAA ATTCATCAGC CTAAGTGGGA CCCCCGGTGG GACAAATGTT TGCCTCTAAT TACGCAAGAT AAACGAAAAC 001840
001841 CCGGTGCTGC TAAACTAGAG CCCGCTCGGA CGCAGACCTG AATAACTTGT TGGGTTTTCA CAGACTTTGA GATTCTGCTT 001920
001921 CAGTGGAGGT AAAAGGAAGG AAAAAGTGAG TGTTTTATCC TGGCGAAGGG AGCATTTGTG CGGGCCTGGG TCCCAGCCCT 002000
002001 GCCCCCTTGG GCTCGGTCTT TCCCGAGGCC ACGAGCAAAG GCTGTTTCGG TCCTATTGTC CGGGCCTGGC GTTCAAAGGC 002080
002081 ATGCGGGCCG CCACAGCGAC CCCGCCTGCC GCCACTGCCA GGCACCCACC GCCCTGCCCC ACAGGGCCAA GATCCTTCAG 002160
002161 CCTGTGCCCT TGGCAACTGG ATTAGGATCC AGGGGAGGCC TGTGTTGCTA GAATCACCCA CATATGGACT TTTATTAATC 002240
002241 CATTTCCCCA ACTTTCCGAG GGCGCTGAGA CACCTATGCC TATGCCTACG TCTGGGGCTC CCCCCTCTTA CCTCAACTTG 002320
002321 GGAACATGAA AATCCAGGGG CTGCAAGCCA CAGTGGGGCT CAAGCTGTGC ATACGACCTG ACAAATCCCA CCCAGGGCCA 002400
002401 ATGCCCTGGC CCCTTTCTCC CTTCCCGGGT ACCCAGATCC TGGAAAGGCA ACAAGGACGG GGCTGGGCCT CCTTCTGTCT 002480
002481 GTGGGGCTGT GAGCAATGCA GAGGAGGAGG GTTCAGGAGC TCTGTGAATA CTCTGGGAGG ATCCAGCGGG TTCCACAGGG 002560
002561 CAGCCCAAGG GCTGGGGCGC TAGGGGTCCC CACGTGAAAG CAGAAGAAGG AAAATATGCT CAATGAACAA AAAAGGACCT 002640
002641 TTGTTGCTTT CTTGGCTGTA GCCCTCAACA CACCCCAGAA GCACCCTGGT TTCTCCAGCA AAAAATTGGA GTTTCCCCAA 002720
002721 CAGGTTAAGA AAGTCAACTG GGAAATTCTG AAGATGAAGT GAAAAAGGAA GAATGTCTTT CCCTTTTGGG TTAAATAATA 002800
002801 AAATAAAAAT AAAGTG
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Predicted Small Protein

Name ENST00000567780.1_smProtein_785:979
Length 65
Molecular weight 7366.5116
Aromaticity 0.109375
Instability index 53.6765625
Isoelectric point 8.84197998047
Runs 10
Runs residual 0.00765625
Runs probability 0.0478007419185
Amino acid sequence MVLCFHMQGHRGLSMGVIQGKVRLFRPQTWDSPGSSQSREPFVPPPIPRETGETLWPLCL
YYLH
Secondary structure LEEEEELLLLLLLEEEEEELEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH
EEEL
PRMN -
PiMo -