ENST00000567780.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000567780.1 |
Source |
Gencode19 |
Same with |
lnc-SMUG1-6:4 |
Classification |
intergenic |
Length |
2816 nt |
Genomic location |
chr12-:54375293..54378108 |
Exon number |
1 |
Exons |
54375293..54378108 |
Genome context |
|
Sequence |
000001 GGCACCCGAT CCCCGACCCG AGAGCTGTGG CCTGGGCCTG GCAGGGTGGG CGGCTCCTGG GTCACCATCT CAGGGGCCCA 000080
000081 CAAGGCTTTG GCCTTGGAGC CGGTTCTGCT GCTTTACTTC AGGCCCTGGC GGTCCTCGCT TTCCGCTTGA CCTTGCCCCC 000160 000161 GCTAAAACAG GGAATATTCC GGGAAAGAAA GAGGGAACCT GCGGAGCCTC GGTCAGTTTG GAGGAGTCAC GTATCACACG 000240 000241 GGAAACCAGC ACACAAGACG CAACAAAACC CGACCCAGAG AAGCGTCCTT TACAGAGCGC ACGGGCTGGG AGCATGTTTG 000320 000321 AAAGAAGACA GACCAGTCTA TTTTTGTGGT TGTTTTTAAA TAAAAGGAAG AAATAAGGGG AACCGTATGT TTCAAACAGT 000400 000401 TATTTCCGTT TCTCCATCGC CTTCTTCCAA AGCGAACTAA ACTCTCCACC CCTTCCTCAG GAAACGGAAT CTGGAGAACA 000480 000481 ACTTGTCTTT CCTGTCGCCC CACATTTTTC CTTGGACAGA GCCTAGGGTT CAGACTTTCC GAAGGGCTGG AGTTTGGCGG 000560 000561 GGAAAGGACT GGAGCCCAGC GCCCTGGAGT GGAGGAGTGA GGAGGCTAGA CCGTTTCTAA GGAGGCCCAA GCCCGCTGCG 000640 000641 GCTAGAAGAC CGCAGAAAGA AATCCGCCGA ATTTCCCCAT CCAGGGGTGG AGAGAGAAGA CGCAGGGGTT CCTGAACCTC 000720 000721 CGGAAAACTG GAAGGAAATG TGGAGTGTAT GATTTGCTTG CAGGACCGGC CAGGGGAGAT TTGAAATGGT TTTGTGTTTT 000800 000801 CATATGCAGG GTCACCGTGG CCTCAGCATG GGGGTTATCC AGGGCAAGGT TAGGCTGTTT AGGCCCCAGA CTTGGGACAG 000880 000881 TCCGGGCAGC AGTCAATCCA GGGAGCCATT TGTCCCACCG CCCATCCCGC GGGAAACGGG CGAGACTTTA TGGCCACTCT 000960 000961 GTTTGTATTA TCTGCATTAG TCTTTCCCCA CCAGTTTGAT CGAAACCGTT CCCTTTTACG AGGACCCAAC GAAAATTTCC 001040 001041 CGTCATATTT ATCAGCCAGG GATAAAAATT TAGTATGGGA ACTGATATTT CCTCATTTAT GGGACGATGA AATTAAATAC 001120 001121 CAAAGCAATT GAGAATTATA TGGCTTTGGG GGTTCCCTCC CCCCTCTTTC ACGTCTCCTT TATTTTCCTG CCTGGTGTGC 001200 001201 TTTTCCCAGG AATTTAGCGT CCCAGTTCCC TACCCTTACC CCCCACTTTG GAGTCTGGTG GGTCCTTTTC CCCACGGCCA 001280 001281 AGTGGCCCTT GGCCACCTCA GCCTTTTCTT TTTTTTTTTC TCTGGGTGTT AGTAGCTGGG GGCCAGGACA GTGCTACCCG 001360 001361 AGCCTCTGCC CAGGCCAGCC AGGACAGGCT GGGATCAGAG AAAGGTTTCC AGGGAAGAGC CGCAAAGGGT TTGAGCCCAG 001440 001441 CCTGGGAGGG GGTGAAGGAG TCGGCAGGAA AGGGTGAAGG AGATAAACTT CAGACAAGCC CCAAGGCGTA GCCTGGGGAA 001520 001521 CCAGCAGACA GGGAGCAGAC CCATCGGCCT CAGGGGTCCC ACCACCCAAC CTCTTTCCAA GCCCACCTCT CACCTTAGCC 001600 001601 AAGGGAGAGG ACAGAGTCGC TTCGGAATTA TCGCCATCAT TAATGAAAAT AATACTCCAG GGAGGAGCCT CCCGCCTCGA 001680 001681 CTCCCACCTC CTCACAAGAC AGAATAGTGT TTAAAGTTGA AATAATTAGA AGTATGATAA ACACGGCCGA TTAATGAAAA 001760 001761 AAGAAATCAA ATTCATCAGC CTAAGTGGGA CCCCCGGTGG GACAAATGTT TGCCTCTAAT TACGCAAGAT AAACGAAAAC 001840 001841 CCGGTGCTGC TAAACTAGAG CCCGCTCGGA CGCAGACCTG AATAACTTGT TGGGTTTTCA CAGACTTTGA GATTCTGCTT 001920 001921 CAGTGGAGGT AAAAGGAAGG AAAAAGTGAG TGTTTTATCC TGGCGAAGGG AGCATTTGTG CGGGCCTGGG TCCCAGCCCT 002000 002001 GCCCCCTTGG GCTCGGTCTT TCCCGAGGCC ACGAGCAAAG GCTGTTTCGG TCCTATTGTC CGGGCCTGGC GTTCAAAGGC 002080 002081 ATGCGGGCCG CCACAGCGAC CCCGCCTGCC GCCACTGCCA GGCACCCACC GCCCTGCCCC ACAGGGCCAA GATCCTTCAG 002160 002161 CCTGTGCCCT TGGCAACTGG ATTAGGATCC AGGGGAGGCC TGTGTTGCTA GAATCACCCA CATATGGACT TTTATTAATC 002240 002241 CATTTCCCCA ACTTTCCGAG GGCGCTGAGA CACCTATGCC TATGCCTACG TCTGGGGCTC CCCCCTCTTA CCTCAACTTG 002320 002321 GGAACATGAA AATCCAGGGG CTGCAAGCCA CAGTGGGGCT CAAGCTGTGC ATACGACCTG ACAAATCCCA CCCAGGGCCA 002400 002401 ATGCCCTGGC CCCTTTCTCC CTTCCCGGGT ACCCAGATCC TGGAAAGGCA ACAAGGACGG GGCTGGGCCT CCTTCTGTCT 002480 002481 GTGGGGCTGT GAGCAATGCA GAGGAGGAGG GTTCAGGAGC TCTGTGAATA CTCTGGGAGG ATCCAGCGGG TTCCACAGGG 002560 002561 CAGCCCAAGG GCTGGGGCGC TAGGGGTCCC CACGTGAAAG CAGAAGAAGG AAAATATGCT CAATGAACAA AAAAGGACCT 002640 002641 TTGTTGCTTT CTTGGCTGTA GCCCTCAACA CACCCCAGAA GCACCCTGGT TTCTCCAGCA AAAAATTGGA GTTTCCCCAA 002720 002721 CAGGTTAAGA AAGTCAACTG GGAAATTCTG AAGATGAAGT GAAAAAGGAA GAATGTCTTT CCCTTTTGGG TTAAATAATA 002800 002801 AAATAAAAAT AAAGTG |
Predicted Small Protein
Name | ENST00000567780.1_smProtein_785:979 |
Length | 65 |
Molecular weight | 7366.5116 |
Aromaticity | 0.109375 |
Instability index | 53.6765625 |
Isoelectric point | 8.84197998047 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0478007419185 |
Amino acid sequence | MVLCFHMQGHRGLSMGVIQGKVRLFRPQTWDSPGSSQSREPFVPPPIPRETGETLWPLCL YYLH |
Secondary structure | LEEEEELLLLLLLEEEEEELEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH EEEL |
PRMN | - |
PiMo | - |