ENST00000567877.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000567877.1 |
Source |
Gencode19 |
Same with |
lnc-UQCRFS1-4:1,NONHSAT064037 |
Classification |
intergenic |
Length |
1570 nt |
Genomic location |
chr19-:28909390..28920397 |
Exon number |
2 |
Exons |
28909390..28910818,28920257..28920397 |
Genome context |
|
Sequence |
000001 CTGGGAGGCA GAGACCCTGT CTTCAGGTGT TGGCTGAAAG AAATGGTAAC TTATTTTAGC AGCCTTGAGC TTTCTCATGC 000080
000081 GGGCACATGA AGAGGACTAG TGTCATCTTA GGGAATGCGG CCTCGCACCA TTGGAAACAA TGATTCTAAA GACCATTTCC 000160 000161 ACATGGAGAA GCTGCCAGAA CAAGCACTGC TACCCTTGGA GGCCATTGAC ATTGTGAGGT CGCTGGGACT GAAAGGAGGT 000240 000241 TGACCAGAAG TTCTGTTTGG CAATGCAAAG CCAGGAGGAA AAGTTAATGG AGTTTGTCCC CCGGGTCCCA AGAAAGCTGA 000320 000321 CCCAGGACGA TGAAGCTAGA ATTTGTGTTC TAGGAGGTGC TGCTTCTTCC AGGAAAGTCT ACTCAAAGCA CACACTGTGA 000400 000401 GCTGCTGCAT GTCTCTTGAG CTAGTTCACT GCAGTTTTCA TGATGAAAGT GATCTGTTTC AGTAAACTTT CTGTTATTTG 000480 000481 AGAGCATGGG AAAAATATTT GCTGTGATTT CCCAATTCCC CATTTTTTCT GATTCTTTGT TGCAGTTTCC ACAACTTTGT 000560 000561 TATCAGGCTG TGACAGAGGT TTGTGAACTG ATGAAAGCTC CAGAGCCTCC CAGGCCCTCT GAGTCTGATG CCTGCACTCC 000640 000641 ACAATCAGGC CTCAAGCTCA GGGCGCCTGC CACCAACCCA CGCTGGGCTT CAGGGGCAGG CAGCACTTGA ATGGGGTTTG 000720 000721 GTTATTGTCT TTCTTTATTT TCTCTTATTT TAAGCCTTAA AAAAAAAAAG ATAAGGTCTT GCTCTATTGC CCAGGCTGGA 000800 000801 GAGAAATGGT GTGATCATAG CTCACTGCAG CTTTGAATTC CTGGGTTCAA CCGATCCTCC CACCTAAGCC TCCCGAGTAA 000880 000881 CCAGGACTGC AAGTATGCAC CACCACACCC AGTTAATTAA ATTTGTGTGT GTGTGTGTGT GTAGAGGTGG GTTCTTGCTT 000960 000961 TGTTGCCCAG GCTGGTCTTG AACTCTTGAG TTCAGACAAT CCTGCCACCT CAACCTCACA AAGTGCTGGA ATTACAGGCG 001040 001041 TGAGCCACTG CACTCAGCCT CCTTAAGCCA TTTGCTTAAG TGGCTTTATT GCAAAACAAT ATCAGAATAA CAAAGAAATA 001120 001121 TAAGGTCAAA CTTTCCCTGT TCCCATCTAG TCCAATAAGC ATTGCTGCTC TTGCCAGGGA TTCTCGCCCA TCTCCATGTG 001200 001201 CCAGTGCAAT CCATACTGGT TGTTCTCCTT GGCTACCCCA CATCTGAGTC TCTGCCTTGT CTGCATTCTT CCCCACTTTA 001280 001281 TGAAGAGATG AGTCAGTGCC TGATTTTTTC TGCCTCTCTT GTCACTAGGG CACAGCCATG TGCATGGGCC CTGTCACTCA 001360 001361 GAAGCCCCCA TCCACCAACA ACATGGCTCT GGGGGCCTCC TCTCTCTGGA AGAATTGGCA GTTTTAGCAA GAAAGGTTTT 001440 001441 CAGAGGCAGC AATGATGGTG GAGATGTCCA GGGCCAGTGG CAGGTCAAAC CATTCTCTGT GTCATTTGGG GCAGTGTTTA 001520 001521 TGCTGTCCCT CATTTTGGTT CCCTAAGCCT CCGAACATGT ACGTGAATTT |
Predicted Small Protein
Name | ENST00000567877.1_smProtein_485:709 |
Length | 75 |
Molecular weight | 7970.0783 |
Aromaticity | 0.0810810810811 |
Instability index | 69.4756756757 |
Isoelectric point | 6.08343505859 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.019267166326 |
Amino acid sequence | MGKIFAVISQFPIFSDSLLQFPQLCYQAVTEVCELMKAPEPPRPSESDACTPQSGLKLRA PATNPRWASGAGST |
Secondary structure | LLEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEELL LLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |