ENST00000569238.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569238.1 |
Source |
Gencode19 |
Same with |
lnc-PUS3-1:1 |
Classification |
intergenic |
Length |
1080 nt |
Genomic location |
chr11-:125743344..125744423 |
Exon number |
1 |
Exons |
125743344..125744423 |
Genome context |
|
Sequence |
000001 GTAAAAATTC TCAAACACTG CATACACAGA GAGGATAGGA GACATGGCCT TTGCGGATAG GAAATGAGGA AATTTTGCGA 000080
000081 TAGGACAGCT GTAGATCCTG TTGCGGACAC CCAGCCGGGC AGTTGGAGGT GGGGTCAGTC CAGAAGCCTT CAGATAACAC 000160 000161 CAGGGTGTAG TCCTGGCGAG AAATCTTCAG TTGCTTCAGG ACCTTTTCTA GCCCCACGCG ACGGCTAGGT CCTCCGTGAG 000240 000241 AGAAAACTGG TTCGAGAAGC ATGGCCAACA TTCCCAATGA TCCGTGAGTA TTGAGAAGTT CTCCATGTTC TCCCAAGCAA 000320 000321 GCCTAACATC TGAGACTTCC CGCATGGCGG CCGCCCTATT AGCATTTAGG TGGCTATAGG ATGCCCATTG TTTGAACTTA 000400 000401 AGATGGAGGC CGAGAGCCTC CAAATGAAAG GACAGAGTTG AAAGTTAAGT TCTGCGCCTG TACTCACCCC TCTGATGAAT 000480 000481 ATACCTTCTG TTCTGATTCT GATCCTGGGC GAGTCCCCAC AATGAAGTGG TGTTGTCTGT CTGGGGAAAT AACTGAGGTT 000560 000561 CGTTGTCTCG CGCTAAGGAG AACAAAGATG TGGGCACACA GGGAATGGGT TTAAGAGCAG AAAGTTTAAT AGGTGAAAGA 000640 000641 AACAAGAGGA AAGCTCCCCT GTGCAGAGGG AGGGGGTTCC GAAGGGATCT CCCGGGTTGC GGTGGGAAGC GGCTGGTTTT 000720 000721 ATAGAGGGCT TGAGGAGGCA GTATCTGATT TACATAGGGC CTAGGGATTT AGTTGGACCA AGTGTGCCAT TTACATAGTC 000800 000801 CACAAAGAGG CTGGCCATCC CACCCTAATC TTTCTTTTAT TAGGCAGATG TGGTTTCCAC CTGGCCGGTG CCATGACACC 000880 000881 CACACACATG GCGACAAGGA GAAGGGAGAA GAAAACCTAT TTGTTGTATA TACCTGGCTT TTGGCACAGC TGCCGGGATT 000960 000961 CACCTGTGCA AGTTTCCAGC TTGCTTATCT ATGCTTGCAG CTTGATTTTT CAGGCTACTT TCTGTTAGAA AAGAAATGAT 001040 001041 TTGGGGGCTG CTTTCTATTA AAAGAAAAAC CTTACCAAGG |
Predicted Small Protein
Name | ENST00000569238.1_smProtein_872:1027 |
Length | 52 |
Molecular weight | 5968.9721 |
Aromaticity | 0.137254901961 |
Instability index | 78.737254902 |
Isoelectric point | 9.35247802734 |
Runs | 10 |
Runs residual | 0.0418365365948 |
Runs probability | 0.0324236000706 |
Amino acid sequence | MTPTHMATRRREKKTYLLYIPGFWHSCRDSPVQVSSLLIYACSLIFQATFC |
Secondary structure | LLLLLLLLHHHHLLEEEEEELLLEELLLLLLLHHHHHHHHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |