ENST00000569742.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000569742.1

Source

Gencode19

Same with

lnc-TSPAN3-1:1,NONHSAT047419

Classification

intergenic

Length

1356 nt

Genomic location

chr15-:77334178..77335533

Exon number

1

Exons

77334178..77335533

Genome context

Sequence
000001 GGTTGCCTGG GATATGCTGC CTGTCCCATG CTGGAGAATC AACTTACTGG AGGTGCCCCC CCGCCAAGCC ACAGGAGCAG 000080
000081 AGAGCTGTCA CGGTGGGGAA TGCTGCTGGG ACCCGTGCAG GACGAAAGGA GACAGAAGAA AAAGGCCATC TTCCTCCTCT 000160
000161 AGCCTTGTTA GCCCCTTCAG AGCCCACTGT GGGTCAGGCT GGCAAAGGGT AAAGGAGTTT TCAGAGCCCC CTCTTCAGTG 000240
000241 TGACAAGGAA GGGCAAGGTC AGGGAAATTT GGAGTTAAGA GGCAATAAAT GAGTACCTGG CACACCTAGT CGAGGTGTGT 000320
000321 CCACTTTCTC CATAGCATGG TTACTGTTTT TTTCTTTTCA ACTAATAAGA AATCTCTGGA GACACACTGT CTCCATGTAC 000400
000401 ATACCCTGTT CCTCATGAGA CTCTTCCCCC ATTCCCCGAC CAGGTTCAGC AAATGTTGCT GATTCTGGCC TGATTCAATC 000480
000481 TTTATGATGA CTGCCAAGCG ACGTTTCTGC AGCCCAGCAC TCCTTCCTCA TTTGCCAGTC ATCCCTCCCT TCTCCTTCAT 000560
000561 TTATTTTCAT ATATCCACTA TGGATTCCCA TTTTTTCAAA AGTCGACTTC ATCATTGACC TTTGGGGATG GGGGAAGAGT 000640
000641 TCCTCAGATA GTTCCCGACT TGGCCAGCGA GAGCCCCTTC GAGTGCCTCC TATATCCCAG CATTTTTGGA AGCACTCCCC 000720
000721 TAATTTCTGA TCTAACAAGA TGTTCCAGGC CCCTGGGCAC CAGCCATGGA TCAGTGTTTG TCCCAGGAGC CCTGGTCCCT 000800
000801 GGCACTAGGT GTGCTTATTG CAGCTGGGGT GTCTTTGCTT CTTGTCCTAT AGATGATTGA CAGAGCTTGT CTTACTGCCT 000880
000881 TTTTTAAGTG TATTTTTTTA AACAAAAGTA ATTGGTGCTT TAAAAAATGT GAACAATACA GACATCTGTA AAGAAGTACC 000960
000961 CACAGGGAAG CAAGTTCAGC AGTTCAGCAA TGGCATGTGT CTTTGCAGAC TACATACACA GAAACAGACT TGGTATTGGG 001040
001041 TTTTGGTTTT TGCTTTTTGC TAATAGGAAT TTTATCCTAC AAGATCCTCT TTCTGTCTTC ACAACATAGT CTGATGCTCC 001120
001121 TTCCATGTCT AACTGTAGGA TTTGTCATTC CATTGTGTTA GCTGTGTGGG TACATTAGTA CCATGATTAA CCAAGGTGTA 001200
001201 TAAAGGGCAG GCCTGCAGGC TGCCTCCAGT GCCTCCACTA CTCGCCACAG TGATCATCTC TATACACACA CTGCAGTCAT 001280
001281 TTACAATTTT TAAAATGAAA ACAATTTTTA TTGAGATGCA ATTCACATGG CATAAAATTA ACGATTTTAA AGTAAA
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Predicted Small Protein

Name ENST00000569742.1_smProtein_989:1108
Length 40
Molecular weight 4608.3477
Aromaticity 0.205128205128
Instability index 41.7615384615
Isoelectric point 7.99884033203
Runs 6
Runs residual 0.0148944193062
Runs probability 0.0434552199258
Amino acid sequence MACVFADYIHRNRLGIGFWFLLFANRNFILQDPLSVFTT
Secondary structure LLEEEHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
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