ENST00000569742.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569742.1 |
Source |
Gencode19 |
Same with |
lnc-TSPAN3-1:1,NONHSAT047419 |
Classification |
intergenic |
Length |
1356 nt |
Genomic location |
chr15-:77334178..77335533 |
Exon number |
1 |
Exons |
77334178..77335533 |
Genome context |
|
Sequence |
000001 GGTTGCCTGG GATATGCTGC CTGTCCCATG CTGGAGAATC AACTTACTGG AGGTGCCCCC CCGCCAAGCC ACAGGAGCAG 000080
000081 AGAGCTGTCA CGGTGGGGAA TGCTGCTGGG ACCCGTGCAG GACGAAAGGA GACAGAAGAA AAAGGCCATC TTCCTCCTCT 000160 000161 AGCCTTGTTA GCCCCTTCAG AGCCCACTGT GGGTCAGGCT GGCAAAGGGT AAAGGAGTTT TCAGAGCCCC CTCTTCAGTG 000240 000241 TGACAAGGAA GGGCAAGGTC AGGGAAATTT GGAGTTAAGA GGCAATAAAT GAGTACCTGG CACACCTAGT CGAGGTGTGT 000320 000321 CCACTTTCTC CATAGCATGG TTACTGTTTT TTTCTTTTCA ACTAATAAGA AATCTCTGGA GACACACTGT CTCCATGTAC 000400 000401 ATACCCTGTT CCTCATGAGA CTCTTCCCCC ATTCCCCGAC CAGGTTCAGC AAATGTTGCT GATTCTGGCC TGATTCAATC 000480 000481 TTTATGATGA CTGCCAAGCG ACGTTTCTGC AGCCCAGCAC TCCTTCCTCA TTTGCCAGTC ATCCCTCCCT TCTCCTTCAT 000560 000561 TTATTTTCAT ATATCCACTA TGGATTCCCA TTTTTTCAAA AGTCGACTTC ATCATTGACC TTTGGGGATG GGGGAAGAGT 000640 000641 TCCTCAGATA GTTCCCGACT TGGCCAGCGA GAGCCCCTTC GAGTGCCTCC TATATCCCAG CATTTTTGGA AGCACTCCCC 000720 000721 TAATTTCTGA TCTAACAAGA TGTTCCAGGC CCCTGGGCAC CAGCCATGGA TCAGTGTTTG TCCCAGGAGC CCTGGTCCCT 000800 000801 GGCACTAGGT GTGCTTATTG CAGCTGGGGT GTCTTTGCTT CTTGTCCTAT AGATGATTGA CAGAGCTTGT CTTACTGCCT 000880 000881 TTTTTAAGTG TATTTTTTTA AACAAAAGTA ATTGGTGCTT TAAAAAATGT GAACAATACA GACATCTGTA AAGAAGTACC 000960 000961 CACAGGGAAG CAAGTTCAGC AGTTCAGCAA TGGCATGTGT CTTTGCAGAC TACATACACA GAAACAGACT TGGTATTGGG 001040 001041 TTTTGGTTTT TGCTTTTTGC TAATAGGAAT TTTATCCTAC AAGATCCTCT TTCTGTCTTC ACAACATAGT CTGATGCTCC 001120 001121 TTCCATGTCT AACTGTAGGA TTTGTCATTC CATTGTGTTA GCTGTGTGGG TACATTAGTA CCATGATTAA CCAAGGTGTA 001200 001201 TAAAGGGCAG GCCTGCAGGC TGCCTCCAGT GCCTCCACTA CTCGCCACAG TGATCATCTC TATACACACA CTGCAGTCAT 001280 001281 TTACAATTTT TAAAATGAAA ACAATTTTTA TTGAGATGCA ATTCACATGG CATAAAATTA ACGATTTTAA AGTAAA |
Predicted Small Protein
Name | ENST00000569742.1_smProtein_989:1108 |
Length | 40 |
Molecular weight | 4608.3477 |
Aromaticity | 0.205128205128 |
Instability index | 41.7615384615 |
Isoelectric point | 7.99884033203 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0434552199258 |
Amino acid sequence | MACVFADYIHRNRLGIGFWFLLFANRNFILQDPLSVFTT |
Secondary structure | LLEEEHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |