ENST00000569981.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569981.1 |
Source |
Gencode19 |
Same with |
lnc-CDIPT-1:6,NONHSAT141639 |
Classification |
antisense |
Length |
2440 nt |
Genomic location |
chr16-:29819966..29823306 |
Exon number |
2 |
Exons |
29819966..29820454,29821356..29823306 |
Genome context |
|
Sequence |
000001 AACGGTCACC GGGATTCCTG GAAGAGACGG GGATTTGGGG GAAACGGAGA GGGTTCTGCG AGGAGACGGG ACCAGTGAGA 000080
000081 CAGGCAGGAC CGGGTGGAGG CGTCTCTACG AGCAGGAGGG CAAGGAAGAT GGGGCAAGAC GCGGGGAGGC TGCAGAGGAG 000160 000161 GAGCAGGGTG GGGTTTGGAG AGAATGGAGC CTGCAGAAAG GAGCGGCAGA AACTGGCGCT GGAAGGCTCA AAAAAGGGGC 000240 000241 CCTGGAAAGG ACGGAGCGGG GACAGGAAAG GGAATTCCAA GGGGCAGGAG GAGCTGGGCA GAGGAGCCCG TGTAAACACA 000320 000321 GAGTGGCCCA TGCCCAGGAT GAGGGACAGG TGCAGCTTTC ATTCTCTACC TCGCTGCTCC CAGTCCTAGG GCTCGGACTC 000400 000401 CCCAGCCTTT CCGCAGCCGC ATCCACCCAC CATGGCCTCA GGGCCGTGAC GCGCGTGGGG AGGGATGCGG CTGGGGGCTG 000480 000481 AGCAGCGGCC ATGAGTGTGG ACGGGGGAGG GCGGCATTCC CGTCTGGCAG CTCTGTTTGG GTTTCTGACG GGGCCTCTTC 000560 000561 AAACCTCCAG GGGCTATTCT GGGCCTGTCC GAGTTGGGAA TTCCCCAGAG ACCTGGAACT TGCTCTCCAC AGCCACAGCC 000640 000641 TTGGCCCCGC CCTGTATCTG TGCTGCCGCC AGTAAGGCTG CCCCTGGGGA GGGCGGAGCC AGAACCTCAC AGCCTCACAG 000720 000721 GGCAGAGCAA GGCTGGATTG ACGGACACCA GGCCGAGAAG AAACCCTTGG GGTTGGCGGC AGTTCTTAGT GAGGGCAATT 000800 000801 CATTCAATCC AGAGCCAGAA ACAGGATTTT ATTTAAAATT TATTGTAATG GGGTCCGCGC AAAAGGAAGG GGTGGAGGGT 000880 000881 GGGGTACATG CAGGGGACAC AGGAACACGA TGACATGGCC AGGGCCACAA CTTCTTCTGT CGTGGGGAAG AGGGATGAAA 000960 000961 AGACAAGACC AGGGCTGGAG CTGGGGTGGA AGAGGGGAGG GGGACACTGG CTGCATTCCC CCGCCCCCAG GAAGCACCTC 001040 001041 TAGGCCCTGG ACCCCTCGCT CACCCTGGCC CCTAAGACTC CATCTCTTCT CTGCCTCTGG CCCTCCTGGC TCTTCCTCCT 001120 001121 GCTCCCCTTG ACTTTTTCCC CTGACAGATT CTCAAGTAGG ACGATGTTCA GGGCCTGACC CCAACCCCCC ATACCACCTT 001200 001201 ATGAAGGTAC AACCTTTGCC GGCCCTGCTT CTGCCCCTCC TCAAACCTCA CCGCTTTCCC TCTTTGGGAC AGCTCTGATC 001280 001281 CCCCTCCTTC CTCTCCTCCC TCCCCCTGGA AAAAAAAAAA AAAGGAAAAG AAAGCACCAA CTCCCCGGGG AGGGGCTGCA 001360 001361 GACAGCAGGG GGAGAGGACT GGAAGGAGAG AAGAGGACCG TCGAGGGAAG AGGCTCACAA GTCCCTGGGA AGACAGGGCA 001440 001441 TGGGCTTACA GAGAGGAGAG GGGGTACGGG CAGTGGCTGC TCGTGTCCTC TGCCACCCCT GCCCACTGTC CAGGGGACTT 001520 001521 CAACACAACC GAGGGGACAG GTTTGTGTGG GGTCAGGTCT GACAGAAGAG GAGCAGGAGA AACAAATCGT TAAAACCTAG 001600 001601 CGAATTCCCC TAAGAAAACA TTTCTTCCTC CTTTCCTTCT GGAGGCTCCT TGGTTGGTAG GGAAATAGGA GTTGGTGGGA 001680 001681 AAAGAGGGGG GAGAGGAGCT TGTACCAAGG GACTCTACTC CATTCTCCCC TCTCCCCCGC AACCAACTTG GAGCTCACCA 001760 001761 GGGTTGGGAG GGAAGTGGCT GAGAGCTCAC AGGCACCCCC TCCGCCCCCG AGAGGGAGCC CACAGCTGTG GGAGGGGCTG 001840 001841 CTACTGCTGC CGCTGCTGCC GCTGCCGCCG CTGCCGCTGC CGCCGCCATT GGACAAACCT CACCAGTACC TGCACAGGAG 001920 001921 AAACACCACG GATCACAGCG CGATCTGAAT GGGTGCGTGC TGGTAAAGCC CGGCCCGTGT ACTCCACCTG CCCCAGGAGC 002000 002001 TGGAGACAAG ACCTTGTGGC TGCGCAGCGG AAACCTTGCC TTGTGACCCC TGGAACTGGC TTTCTTGACT ACTCCTTCCC 002080 002081 CAGAGCAGCC AAGTTCCACT CCCGCTTTCC CCACACATTA CCAGGAGGTT CAACCTCTCT GGCAGATCAT CTCTTCCAAC 002160 002161 CAGGACTTCT TAGAGTCTAA TGATGTTCAT TCAGGTGTCC CCCCGCTGCT CCCTTGACCT CTTGTAGGAA TCTAGACGCC 002240 002241 ACGAGCTCTT GGCTACAGCA CCCTTAACCC GTATCCGTGG CAAGGCGTCT GGCCAGGCGC CCACCCTCTG CCCCTGGCCC 002320 002321 TCCCGGCAGC CCTCGGCATG TACCTTTGTT GCAGAGCTCA CAGACATGGT GAGGACCCTG GCTGTGCACC TTCATGTGGT 002400 002401 CCGAAATATA AGCCGAGCTC AGCATCTTGC CACACACGTG |
Predicted Small Protein
Name | ENST00000569981.1_smProtein_128:388 |
Length | 87 |
Molecular weight | 9687.8562 |
Aromaticity | 0.046511627907 |
Instability index | 44.5220930233 |
Isoelectric point | 11.0939331055 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0333176313569 |
Amino acid sequence | MGQDAGRLQRRSRVGFGENGACRKERQKLALEGSKKGPWKGRSGDRKGNSKGQEELGRGA RVNTEWPMPRMRDRCSFHSLPRCSQS |
Secondary structure | LLLLLLLLLLEEEELLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHLLLLL EELLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |