ENST00000569981.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000569981.1

Source

Gencode19

Same with

lnc-CDIPT-1:6,NONHSAT141639

Classification

antisense

Length

2440 nt

Genomic location

chr16-:29819966..29823306

Exon number

2

Exons

29819966..29820454,29821356..29823306

Genome context

Sequence
000001 AACGGTCACC GGGATTCCTG GAAGAGACGG GGATTTGGGG GAAACGGAGA GGGTTCTGCG AGGAGACGGG ACCAGTGAGA 000080
000081 CAGGCAGGAC CGGGTGGAGG CGTCTCTACG AGCAGGAGGG CAAGGAAGAT GGGGCAAGAC GCGGGGAGGC TGCAGAGGAG 000160
000161 GAGCAGGGTG GGGTTTGGAG AGAATGGAGC CTGCAGAAAG GAGCGGCAGA AACTGGCGCT GGAAGGCTCA AAAAAGGGGC 000240
000241 CCTGGAAAGG ACGGAGCGGG GACAGGAAAG GGAATTCCAA GGGGCAGGAG GAGCTGGGCA GAGGAGCCCG TGTAAACACA 000320
000321 GAGTGGCCCA TGCCCAGGAT GAGGGACAGG TGCAGCTTTC ATTCTCTACC TCGCTGCTCC CAGTCCTAGG GCTCGGACTC 000400
000401 CCCAGCCTTT CCGCAGCCGC ATCCACCCAC CATGGCCTCA GGGCCGTGAC GCGCGTGGGG AGGGATGCGG CTGGGGGCTG 000480
000481 AGCAGCGGCC ATGAGTGTGG ACGGGGGAGG GCGGCATTCC CGTCTGGCAG CTCTGTTTGG GTTTCTGACG GGGCCTCTTC 000560
000561 AAACCTCCAG GGGCTATTCT GGGCCTGTCC GAGTTGGGAA TTCCCCAGAG ACCTGGAACT TGCTCTCCAC AGCCACAGCC 000640
000641 TTGGCCCCGC CCTGTATCTG TGCTGCCGCC AGTAAGGCTG CCCCTGGGGA GGGCGGAGCC AGAACCTCAC AGCCTCACAG 000720
000721 GGCAGAGCAA GGCTGGATTG ACGGACACCA GGCCGAGAAG AAACCCTTGG GGTTGGCGGC AGTTCTTAGT GAGGGCAATT 000800
000801 CATTCAATCC AGAGCCAGAA ACAGGATTTT ATTTAAAATT TATTGTAATG GGGTCCGCGC AAAAGGAAGG GGTGGAGGGT 000880
000881 GGGGTACATG CAGGGGACAC AGGAACACGA TGACATGGCC AGGGCCACAA CTTCTTCTGT CGTGGGGAAG AGGGATGAAA 000960
000961 AGACAAGACC AGGGCTGGAG CTGGGGTGGA AGAGGGGAGG GGGACACTGG CTGCATTCCC CCGCCCCCAG GAAGCACCTC 001040
001041 TAGGCCCTGG ACCCCTCGCT CACCCTGGCC CCTAAGACTC CATCTCTTCT CTGCCTCTGG CCCTCCTGGC TCTTCCTCCT 001120
001121 GCTCCCCTTG ACTTTTTCCC CTGACAGATT CTCAAGTAGG ACGATGTTCA GGGCCTGACC CCAACCCCCC ATACCACCTT 001200
001201 ATGAAGGTAC AACCTTTGCC GGCCCTGCTT CTGCCCCTCC TCAAACCTCA CCGCTTTCCC TCTTTGGGAC AGCTCTGATC 001280
001281 CCCCTCCTTC CTCTCCTCCC TCCCCCTGGA AAAAAAAAAA AAAGGAAAAG AAAGCACCAA CTCCCCGGGG AGGGGCTGCA 001360
001361 GACAGCAGGG GGAGAGGACT GGAAGGAGAG AAGAGGACCG TCGAGGGAAG AGGCTCACAA GTCCCTGGGA AGACAGGGCA 001440
001441 TGGGCTTACA GAGAGGAGAG GGGGTACGGG CAGTGGCTGC TCGTGTCCTC TGCCACCCCT GCCCACTGTC CAGGGGACTT 001520
001521 CAACACAACC GAGGGGACAG GTTTGTGTGG GGTCAGGTCT GACAGAAGAG GAGCAGGAGA AACAAATCGT TAAAACCTAG 001600
001601 CGAATTCCCC TAAGAAAACA TTTCTTCCTC CTTTCCTTCT GGAGGCTCCT TGGTTGGTAG GGAAATAGGA GTTGGTGGGA 001680
001681 AAAGAGGGGG GAGAGGAGCT TGTACCAAGG GACTCTACTC CATTCTCCCC TCTCCCCCGC AACCAACTTG GAGCTCACCA 001760
001761 GGGTTGGGAG GGAAGTGGCT GAGAGCTCAC AGGCACCCCC TCCGCCCCCG AGAGGGAGCC CACAGCTGTG GGAGGGGCTG 001840
001841 CTACTGCTGC CGCTGCTGCC GCTGCCGCCG CTGCCGCTGC CGCCGCCATT GGACAAACCT CACCAGTACC TGCACAGGAG 001920
001921 AAACACCACG GATCACAGCG CGATCTGAAT GGGTGCGTGC TGGTAAAGCC CGGCCCGTGT ACTCCACCTG CCCCAGGAGC 002000
002001 TGGAGACAAG ACCTTGTGGC TGCGCAGCGG AAACCTTGCC TTGTGACCCC TGGAACTGGC TTTCTTGACT ACTCCTTCCC 002080
002081 CAGAGCAGCC AAGTTCCACT CCCGCTTTCC CCACACATTA CCAGGAGGTT CAACCTCTCT GGCAGATCAT CTCTTCCAAC 002160
002161 CAGGACTTCT TAGAGTCTAA TGATGTTCAT TCAGGTGTCC CCCCGCTGCT CCCTTGACCT CTTGTAGGAA TCTAGACGCC 002240
002241 ACGAGCTCTT GGCTACAGCA CCCTTAACCC GTATCCGTGG CAAGGCGTCT GGCCAGGCGC CCACCCTCTG CCCCTGGCCC 002320
002321 TCCCGGCAGC CCTCGGCATG TACCTTTGTT GCAGAGCTCA CAGACATGGT GAGGACCCTG GCTGTGCACC TTCATGTGGT 002400
002401 CCGAAATATA AGCCGAGCTC AGCATCTTGC CACACACGTG
[back to top]

Predicted Small Protein

Name ENST00000569981.1_smProtein_128:388
Length 87
Molecular weight 9687.8562
Aromaticity 0.046511627907
Instability index 44.5220930233
Isoelectric point 11.0939331055
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0333176313569
Amino acid sequence MGQDAGRLQRRSRVGFGENGACRKERQKLALEGSKKGPWKGRSGDRKGNSKGQEELGRGA
RVNTEWPMPRMRDRCSFHSLPRCSQS
Secondary structure LLLLLLLLLLEEEELLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHLLLLL
EELLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -