ENST00000571689.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000571689.1 |
Source |
Gencode19 |
Same with |
lnc-USP6-2:3 |
Classification |
intergenic |
Length |
1715 nt |
Genomic location |
chr17+:5095399..5138938 |
Exon number |
8 |
Exons |
5095399..5095458,5113045..5113190,5117345..5117504,5118442..5118588,5126612..5126779,5137119..5137237,5137888..5138106,5138243..5138938 |
Genome context |
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Sequence |
000001 GCGTCCTCAG CTGGTCCTAG ACATGCGTGG CGTCGGGGCT GTGGCACGGT CGGGTCCGGG GACACTTGTT TAACAAGACA 000080
000081 TCTGCCCATG TCCCTGGCCC ATCTCATTGG CTGCAGCACA TCACAGTGGA CCTTCTGCCT CCTCCCAGAT GCCCAGGGAC 000160 000161 AGTGATCTGG AAGGAAGGGG CTTGAGGCTG TTTTCCTAGA ACTCGACTTG AATGCACCAA GGAAAGGCCA TTTGTGGGGA 000240 000241 CATAGCAAGA AGGCAGCTGT CTGCAAGCCA GGAGGAGAAC CCTCACCAGA AACCTCACAG AAATCGGCCA ACACCCTCAT 000320 000321 CTCGGGCTTC CAGCTTCAGA ACAACGAGAA AACAAATTTC TGTTGTGTCC TGGTTCCCAT TTGTAATTGG CACCCTAATG 000400 000401 AAACCGTTTT CTGTAGCCCT GGAAATGGCT GAAAATGAGG GGAGGGAAAT AAAGTGCTAT AATTCAGAGC ATGGAGCACA 000480 000481 CCTTCCTGGT TCACCTGAGC TGGATTCGGA GAGGTAAAAT GGCCATTACC TCGTCTAAGC TGCCACTTAC AGACACAGTA 000560 000561 CAGGATGAGG CCCAGACCCA CAGAGACAAC GATGATGGCC ACAGCTAAGA TGATCCAGAA ATTATTCCTC CACCAGCTCA 000640 000641 TTGCAGTGGA ATCCTGAGAA GAATGGAGAG AGAAGAATGA GAGGGCAAAA GCAGATGGCT ACACCGAGAA CTCACGCCAG 000720 000721 CCCAACACAC TTTGATCTCG AGGCCTCTGG AAGGGAAGGT GCCTAATGAA CTACTGAAAG CCAGAGATGC AATGACAAAG 000800 000801 CAGTCGTACC AGGGCCCCAG GCTGCAATCC CCTGGCCCAG TGCTGATCGG TGGCTCCCAG GGACACGCCC TGATGCCAGC 000880 000881 GCTGGCAGAT GTCTGCTGTG AAGAGAGCAG GAAACTGTCC CTTGGAAAGC TGAGATGCTT ACCTGAACTG TGAAAGTATC 000960 000961 CATATGTGAG CAGCTAAGGA GACAGCAGTG GCTGGAGTGC TGCAGCTCAG GCACAGCTGG GAAGCTCATG ACCCACGGCT 001040 001041 GTCCAGAAGC CAGAATCTTC TCACTGCCCC GTGTCGCTCC CGCAAGGCCT ACCAGAGGAC CCTCATGGTG TGGTAGGGGG 001120 001121 TCCTGGCAGG GGCCAGGGGC CAGGGTGGAG ACTTGGCAGT GGGGGTGGGT TTGGTGTCCC CACAGACGAG TTTGCCGTGA 001200 001201 GCATTCCTGG ATGTGGCAAC CTCAGTCTCA AGAAGAGCGA CAGGACGCCA GCTCCCATGC AGAGACAGAT CCAGGTAAGA 001280 001281 AACCAGCTCA TGTGTGACAA ACTCACCATC TCACCATGAA GGTGACTCTT GAAAGCTCCT GTGCACCTTG GAACTGCTGA 001360 001361 GACATCTTCT GCTTGGAGGA GGCAAGGGAC AGGCTTCCTG TTTCTAAAGG CGTGTGAGTG GCGACCTTGA GAAATGTGGC 001440 001441 CAGTGGAGCA TTTTGACTGA GTTGGGTCCC CTCGTGCAAT ACTGTGAGAC AGAACTCCCA GCGAGGCCCA CGGCCTCTGA 001520 001521 CCATGGGGGT TGGAGTGGGG AAACCAATTA GCCATTTTGT TGAATTGGCT GGTTCTGACT CAAATGAGCA GTCACATTAG 001600 001601 TAAAAATAGG CAAACGGATG TGCATTGTAT TTGCCCAGAG CGAATGAGTT GTTATCCATT TCAGTAATAA TGATAACCAG 001680 001681 ATATGTCTGA TAAATATCTG ATAATGTCTG ATATA |
Predicted Small Protein
Name | ENST00000571689.1_smProtein_791:952 |
Length | 54 |
Molecular weight | 5665.6146 |
Aromaticity | 0.0188679245283 |
Instability index | 86.041509434 |
Isoelectric point | 8.61016845703 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0369571251925 |
Amino acid sequence | MTKQSYQGPRLQSPGPVLIGGSQGHALMPALADVCCEESRKLSLGKLRCLPEL |
Secondary structure | LLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHLHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |