ENST00000571689.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000571689.1

Source

Gencode19

Same with

lnc-USP6-2:3

Classification

intergenic

Length

1715 nt

Genomic location

chr17+:5095399..5138938

Exon number

8

Exons

5095399..5095458,5113045..5113190,5117345..5117504,5118442..5118588,5126612..5126779,5137119..5137237,5137888..5138106,5138243..5138938

Genome context

Sequence
000001 GCGTCCTCAG CTGGTCCTAG ACATGCGTGG CGTCGGGGCT GTGGCACGGT CGGGTCCGGG GACACTTGTT TAACAAGACA 000080
000081 TCTGCCCATG TCCCTGGCCC ATCTCATTGG CTGCAGCACA TCACAGTGGA CCTTCTGCCT CCTCCCAGAT GCCCAGGGAC 000160
000161 AGTGATCTGG AAGGAAGGGG CTTGAGGCTG TTTTCCTAGA ACTCGACTTG AATGCACCAA GGAAAGGCCA TTTGTGGGGA 000240
000241 CATAGCAAGA AGGCAGCTGT CTGCAAGCCA GGAGGAGAAC CCTCACCAGA AACCTCACAG AAATCGGCCA ACACCCTCAT 000320
000321 CTCGGGCTTC CAGCTTCAGA ACAACGAGAA AACAAATTTC TGTTGTGTCC TGGTTCCCAT TTGTAATTGG CACCCTAATG 000400
000401 AAACCGTTTT CTGTAGCCCT GGAAATGGCT GAAAATGAGG GGAGGGAAAT AAAGTGCTAT AATTCAGAGC ATGGAGCACA 000480
000481 CCTTCCTGGT TCACCTGAGC TGGATTCGGA GAGGTAAAAT GGCCATTACC TCGTCTAAGC TGCCACTTAC AGACACAGTA 000560
000561 CAGGATGAGG CCCAGACCCA CAGAGACAAC GATGATGGCC ACAGCTAAGA TGATCCAGAA ATTATTCCTC CACCAGCTCA 000640
000641 TTGCAGTGGA ATCCTGAGAA GAATGGAGAG AGAAGAATGA GAGGGCAAAA GCAGATGGCT ACACCGAGAA CTCACGCCAG 000720
000721 CCCAACACAC TTTGATCTCG AGGCCTCTGG AAGGGAAGGT GCCTAATGAA CTACTGAAAG CCAGAGATGC AATGACAAAG 000800
000801 CAGTCGTACC AGGGCCCCAG GCTGCAATCC CCTGGCCCAG TGCTGATCGG TGGCTCCCAG GGACACGCCC TGATGCCAGC 000880
000881 GCTGGCAGAT GTCTGCTGTG AAGAGAGCAG GAAACTGTCC CTTGGAAAGC TGAGATGCTT ACCTGAACTG TGAAAGTATC 000960
000961 CATATGTGAG CAGCTAAGGA GACAGCAGTG GCTGGAGTGC TGCAGCTCAG GCACAGCTGG GAAGCTCATG ACCCACGGCT 001040
001041 GTCCAGAAGC CAGAATCTTC TCACTGCCCC GTGTCGCTCC CGCAAGGCCT ACCAGAGGAC CCTCATGGTG TGGTAGGGGG 001120
001121 TCCTGGCAGG GGCCAGGGGC CAGGGTGGAG ACTTGGCAGT GGGGGTGGGT TTGGTGTCCC CACAGACGAG TTTGCCGTGA 001200
001201 GCATTCCTGG ATGTGGCAAC CTCAGTCTCA AGAAGAGCGA CAGGACGCCA GCTCCCATGC AGAGACAGAT CCAGGTAAGA 001280
001281 AACCAGCTCA TGTGTGACAA ACTCACCATC TCACCATGAA GGTGACTCTT GAAAGCTCCT GTGCACCTTG GAACTGCTGA 001360
001361 GACATCTTCT GCTTGGAGGA GGCAAGGGAC AGGCTTCCTG TTTCTAAAGG CGTGTGAGTG GCGACCTTGA GAAATGTGGC 001440
001441 CAGTGGAGCA TTTTGACTGA GTTGGGTCCC CTCGTGCAAT ACTGTGAGAC AGAACTCCCA GCGAGGCCCA CGGCCTCTGA 001520
001521 CCATGGGGGT TGGAGTGGGG AAACCAATTA GCCATTTTGT TGAATTGGCT GGTTCTGACT CAAATGAGCA GTCACATTAG 001600
001601 TAAAAATAGG CAAACGGATG TGCATTGTAT TTGCCCAGAG CGAATGAGTT GTTATCCATT TCAGTAATAA TGATAACCAG 001680
001681 ATATGTCTGA TAAATATCTG ATAATGTCTG ATATA
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Predicted Small Protein

Name ENST00000571689.1_smProtein_791:952
Length 54
Molecular weight 5665.6146
Aromaticity 0.0188679245283
Instability index 86.041509434
Isoelectric point 8.61016845703
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0369571251925
Amino acid sequence MTKQSYQGPRLQSPGPVLIGGSQGHALMPALADVCCEESRKLSLGKLRCLPEL
Secondary structure LLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHLHHHHHHLLLLLLLLLLLL
PRMN -
PiMo -