ENST00000574716.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000574716.1 |
Source |
Gencode19 |
Same with |
lnc-MMD-4:1,NONHSAT054805 |
Classification |
intronic(AS) |
Length |
1740 nt |
Genomic location |
chr17-:53348865..53351014 |
Exon number |
2 |
Exons |
53348865..53350460,53350871..53351014 |
Genome context |
|
Sequence |
000001 ACACGAGAGC TGGGGGACTG GGCACCCAGA CAGTGGCTGT TTCCACATTG GCAAAACAGG AGTTGGTAAC CCAGAAGCCA 000080
000081 TGCTGCGGGG TTAACATCAG GGAACCGATT CGTCCCAACC CAGAAGGAAG AGAAAGGTCA GGCTACATAC CCAAAAATAC 000160 000161 CTTTTGCCAC AGGCTTGGGA CTACTATCCT GTGAATGTCA GCAAGCCTGT CCTCTACAGG GATCCGTGGA GAAGATAAAC 000240 000241 TCTACAAGAA ACAGAAAAAT GTCTACCTGT CTCCAGAACC ATGCAGACTC CCTCCCCTTC AGGATCTCCT AGCCCCTGAT 000320 000321 GAATGAACAG CACTTCCAAG ATGCTTGAGA CACCGGGCAC AGCTACTATC AGTCATGGCG CTCCCAACCT GCAGACATTA 000400 000401 TCAGTCTGCT GGACTGGAAA GATACACGAA CTGCACGCCC TTAAGCGGAG CTTCACCTCA TAATATTGGG AAAAGTAAGA 000480 000481 GAATCCTCTG ACCTTCCATA AACCCAGAAT CACCTGCACA GAACTTCCCT CCATCATTAC TCAGATTCCC AGGCCAGCGT 000560 000561 TTTCCTTCCA TACCCAAACC TTCTCACAAG GAAGGTCGGC AGAAACAGAA TACAAACTCC ATATTGCAAA GGTACAATGG 000640 000641 GTTCTCCCCC ACCCCCGCTC CTTTTGTGCC ACCCACTTAT GCCATCCTTT TCCCACACAC AACCACATGG AAGGGTTTTC 000720 000721 ACTTTACTCT GTAACCAGCC TTCATCATAA CCCAGTCTCC GTGCTCAGAA CTAGAAAGAC AGCCTTCTTA ATTCTCAGCG 000800 000801 GAATATGGGC CTAACAGTGG TAGGACACCC CCCAGCTATT CAAAGAAAAA CCACCAGAGG AAATAATTTC AAATCTGGCT 000880 000881 TTACAAGCAT GTAATATAAA AATAACTCTG CCTTTGTCTG CTATAGATGA CTTTCCCTAA AGGGATGGCT GTCCTTAAAG 000960 000961 CAATCGCTCA ATTCTCATGG CAAACAGATT CTTCTTTTTC CAGTACCCAG CACATATTCG TCCCTCCAGG AGAGCACCCC 001040 001041 CACATCCCAC CTCTGACAGT ATCTAAAATG CAAACATTGA AGTCATCAGA ATGACTCCTG TCATCTCTGC TGGCCTAGGA 001120 001121 ACATTCAGGA CACTGCACCT TGGATGACCG AGGAGCCCCT GCAGTTAGCT CTGGCCTCCA AGAACCACTA CTCTTCCCTT 001200 001201 CATTAAGATG TCAGCCCAGA AAGCTTGGTG ATCCCACAAT AGCCACAACA GGTTTTAATG AATCCCTGGA TTGTTTCTTG 001280 001281 AAAGAAAACT GGATTTCTTC AGATATTTGA TTCATTCTTT GATCAGACAG TTAGAGGAAT AGGGATGGGG TGCTCAAGAT 001360 001361 AAGAAAGGGG TTGGGGCAGT CATGGTAAAT AGTATGAGAA TTCACAAAAA TGGGCCAGGT TGTGGTGGCT CACGCCTGTA 001440 001441 ATCCCAGCAC TTTGGGAGGC CGAGGGGGTG CGGATCACTT GAGGTCAAGA GTTTGAGACC AGCCTGGCCA ACATGGTGAA 001520 001521 ACCCCGTCTC TACTAAAAAT ACAAAAATTA GCCGGGCATG GTGGTGAATG CCTGTAATCC CAGCTACTAG AGAGGCTGAA 001600 001601 GCAGGAAAAT AGCTTGGACC CCGGAGGTGG AGGTTGCAGC GAGCCAAGAT TGTGTCACTG CACTCCAGCC TGGGTGATGG 001680 001681 AGCTAGACTC CATCTCAAAA ATAAATAAAC AAATAAGTAA ATAAATAAAT AAATATTCAC |
Predicted Small Protein
Name | ENST00000574716.1_smProtein_926:1093 |
Length | 56 |
Molecular weight | 6084.9517 |
Aromaticity | 0.0909090909091 |
Instability index | 54.6709090909 |
Isoelectric point | 8.25018310547 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0442599462208 |
Amino acid sequence | MTFPKGMAVLKAIAQFSWQTDSSFSSTQHIFVPPGEHPHIPPLTVSKMQTLKSSE |
Secondary structure | LLLLHHHHHHHHHHHHHHHLLLLLLLLEEEEELLLLLLLLLLLLEELEEEEELLL |
PRMN | - |
PiMo | - |