ENST00000575953.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000575953.1 |
Source |
Gencode19 |
Same with |
lnc-PLA2G15-2:1,NONHSAT143221 |
Classification |
intronic(S) |
Length |
1187 nt |
Genomic location |
chr16+:68233698..68234884 |
Exon number |
1 |
Exons |
68233698..68234884 |
Genome context |
|
Sequence |
000001 CCAGGATGGT CTTGATCTCC TGACCTTGTG ATCCGCCTGC CTCAGCCTCC CAAAGTGCTG GGATTACAGG TGTGAGCCAC 000080
000081 TGCGCCCGGC CTAGATGAAG TTTTAAAGGC TCTCCATTCT CTTTCTCGCT GGAGTTCACA CTTTGGTATT CTTAATGATA 000160 000161 ATTATATTCG TCTGTGTCTC TTCCCTAGCT TCTTTGGAAC ATCTCAGGGC CTTTTGAGTT CTAACTACTC TTCTTGTTTT 000240 000241 ATGTGGGCTC TATCTAATAC CTCTAGATTA ATTCAGAACA TATTTAATCC TTCTTGTATA ATAGCCTTCA CATGTGTGAA 000320 000321 AGCTTGATCT CTTTCCCAGT CTTAAAAACT CTCCAGCAAC TTCATCCTTC CCTCACCAAA ATGCAAATTT CCTTCTGCTT 000400 000401 GAACCGTGAT GTTTAAGTTC CCTTTCATAG TGGAGTATCC AGAAGGGAAC ACATTGTAGC TAGCTTGTTG TGGGTTAAGA 000480 000481 CTGTCACTTT CCCTGTTGAA AAGACTTTAT CAGTATGGCC TGAGGTCAGG GGATTTTCTT AGCTGTGATA TACTGTTGAT 000560 000561 TTAGTGAGTC ATAATTATGC AAAGTTGTGT CCTTTCCCTA CATAGGTTTA TATATATATA TATATGGGGT TTTTTTGGAC 000640 000641 CAAAGACTAA ACTTTATAAT TATCCTTGTT CAGTTTCATT GAGATGATTT CGGTGCCTCA TACCAATTTT CCAAGCTCAG 000720 000721 AAGAATCCCA GAAGCATTTC TCAGTCTCAG GCTTCCTGGG GCAAGGCAGA TATTCCTTTG GGGGTTACAA CAGCAGCACA 000800 000801 GTACTGACGT TTCACCAAGT TCTCTTTCAA GTAGTCCCCC TGGAAGGCTG TAATATAAAC TTACTCAAAC AATTAAGGCA 000880 000881 TAGTTCATGA CTATTTTGCT TCTTGTCTTT ATATTTTCTT CACTACCTCC ATATATCATT GCACCTCCTT GAAAAGCATG 000960 000961 TTCTGTGGCT GTCCAATTAT CACTGAATTT TACTCATATT TACAATTCGT ATGCCTGGAA ATGTAATTTT CCGTAAACAT 001040 001041 TTATGTTCGT TATGGTTTTT ATGCCGCAGG TTTTGGACCA GACAGTAAAC ATTAAAACAG TTGATTTTAT AACAGATATG 001120 001121 GAAACTGTCA AGCTGTTTTT CATTTGTTTA TTTTTTGAGA TGGAGTTTCC CTTGTCACCC AGGCTGG |
Predicted Small Protein
Name | ENST00000575953.1_smProtein_683:889 |
Length | 69 |
Molecular weight | 7571.4348 |
Aromaticity | 0.117647058824 |
Instability index | 49.325 |
Isoelectric point | 7.99810791016 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0426843956257 |
Amino acid sequence | MISVPHTNFPSSEESQKHFSVSGFLGQGRYSFGGYNSSTVLTFHQVLFQVVPLEGCNINL LKQLRHSS |
Secondary structure | LEELLLLLLLLLLLLLLEEEEEEEELLEEEEELLLLLLEEEEEEEEEEEEEELLLLLHHH HHHHHLLL |
PRMN | - |
PiMo | - |