ENST00000577270.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000577270.1

Source

Gencode19

Same with

lnc-MRC2-1:3,NONHSAT055174

Classification

intergenic

Length

3145 nt

Genomic location

chr17+:60783595..60815276

Exon number

3

Exons

60783595..60783830,60803389..60803512,60812492..60815276

Genome context

Sequence
000001 AGCTTTAGTC CCTGGGACCG TTTCTGTGCC CAAGGAGAGG GAGGGCAGGG GAAGGATGGA ATTTCATCTA GAGTAGCAGG 000080
000081 TCCTGGTTGC CTGGTAAATT ATGCATCAGG ACTGGGCTAG CCACTGCCTC CGTTTTCTCT GGGCTCCTGA GATAACCTCC 000160
000161 ACCTGCCTCT AGATTCTGTG CCAGCTGATC GTTATCTATC TCATCAACTC TTGTTCCATC AGGAAACTGC ATCTTGGTGG 000240
000241 ATGATGAACC AATAAACCTG GACACAATCT CCCGAATAAC ACCACACATG CCAACAAATG ACATCAGCAT TCCAGAATGT 000320
000321 AAGCGGCTGG AATCTGATGA AGATAAGAAC TAACGAAAAT CCCACATGAG TCATGCTAAT ATACACAAAG AGGGCTCAAA 000400
000401 TTCCAAGAAT CAATTTCCAG ATCAGTAAGC CAAGATCAGA GCATGGTAAA CACCTATCAT AAATGAAATG GTAGAATCCT 000480
000481 GACATGGTGT TTAATGATGG CTTTACAAAG TATCACATTT CATAGCTGTG AACTATCCCC AAATCATCTC ACAAAAAAGG 000560
000561 AAAGATCAAA GAAAAGGGCA ATTCAGAAAA GATCTTATTT CTCTCTCTCT CTTGCATGAA AAAGAGCACA TAAAATAGAA 000640
000641 GCAGTGGTTA CCCCAGCGTG GCCCTTCAGA GAACCGAGGT AACTATGGTA ACTAAGAACG GTCTTTTAGT TCGCAAGGTT 000720
000721 CGAATTCTAG AACTGTTGGT TGGATTTGGG GTAAGTCCCA TAAGGGAGAG CTGCGAACTT CAAGTGTGGA CTGGTTCATT 000800
000801 CTCTAGGGAG ATAGCAACCT TTTCCTAAAA AATCTTGGTT CTTCATTGCT GGAGAGAAGA ACAAGCCCTG TGAAGCAGTC 000880
000881 AGAGATCCTT ATACCCAGCA GACTTAAGGG TGTGGTATTC AAGGAAAAAA ACACTTTGGG AAATAGAGAA GAAACTGATC 000960
000961 AGGAACACCA GACTTTTCTT TATAAATACG TATATTTTAA GAGCAACAAA ACAGAGACAA TTTTCTCAAA ATAAGCAACC 001040
001041 ACTAAAATGT CAAGGAAGGA CCCATTTATG ACTTAAAATT CCCATGGCTC TCTAACGAAA GCAATGCTAA TTTTGGCCTT 001120
001121 GGGAAAGTGG AAAAAATATA TAATTATGAA AAGTCCTCAC CTTTCTTGCA ATTTCTTGAG TTTCTCAGGG TCTGCCTTTA 001200
001201 TCTTACTGGT TTCCTTTTCA TCTGTGAAAC CAGAGGCTGC CATCCTGCTC CCATTATCAT TTTGATTTGG GAAATGAGAC 001280
001281 ACTGCAAAGA AAGTAAATGG TGTATTTTCT TGCAGAGACC CAGACACATG CAAATGGCCT TCTGAGTTCA TTCTTGATGG 001360
001361 AGAGGAGCTG GAAGAATCCA CTAAGGACAA ATTGCCCTGT GGATTTAGTA AGAGATCTGT ATATAGTGGA GCCCCCTGAG 001440
001441 GCTGGCTTGT TAAAGTAGTA TCTTCTGCTT CCCTGACAGC AAATTCGTGT GCACTGTTTA CTGGGAAATA ATTATGGTTT 001520
001521 TCGGCACTGG CAAATGGAGT CCTATTTCTA ATGGGAGACA GTGGTTGGCA AACATGAAAC CCTGAGTTTC CCTCTGAGTC 001600
001601 TGAGCTGTGA ACTGAAGTCG ATGACATTGA CAAGTCTACT GGAATATCAT CTCTCAGAGC AGAATGCATG AATGATGCAG 001680
001681 GAGGGTTATA GGATGAATTC ACTGATGATC TTGGAGATAT TGGTCTGCCA GAAATAAAGT AGTCAAGAGA ATTTTGAGAA 001760
001761 CTGTTTAAAT AGTCTTTCCA GTATCCTTCA GAATCATGGG TGCCAGGCCT ATGTTCCACA GAAATACAAT CACTCCATAC 001840
001841 ATTTTCAGCA TTGACACCAA CCTCTTGTCT GGGCTCGGAT TTGGTGTCCC ACGAAAGAGG GCTCTTTTTC GCATTTTCAC 001920
001921 TGCCACCTCT GTCCTTCTCT GTAGCAGATT CCCTATCAGG CAGCCCGGGG TCTTGGGACA ACCTTTGCCC AGCAGAAGGC 002000
002001 CGCTCTGTTG CTGGCTCCAT TGCATTGCTT ATTCTCAATG AGCCATGACT GGGCTCACTT CTTCTTGAAG AATGACCTCT 002080
002081 GCAATTTTCA GCATTTTCTT CAAAATTTTT ATTTTTGGCC TGAGGGGTCG ATGTCCCCCC AAATCTACTT CTTTTGTGAT 002160
002161 GGGAAGGAGA ACAGGGTGAG CGCACACCAA CCCACAGACA TTCTTCAGAC TGGGTTTCCT CTTCAGTGTC ATCGCTTTCT 002240
002241 CTTCTGCTGT TCAATGACAA AATGGAATAA AAGTCTTCAT CTCGGAACCT AAATGATGCC TTTCTTGGCC CTCCTACAGT 002320
002321 GGTGGGTGTG AGTGGTGGCC CCGAGAACTC ACTCAATACT TGAGGACTAT TTTTTCCTTG GAAGGCCTGG GACAGGGCTG 002400
002401 GATGCAGCTC ACTCTGGGAA GGAGCACTCG GGTCTCCTTT TTTGGCTCTA TCAGGGGCGT TCTCAGTCAT TGGCTGTGAC 002480
002481 GATGGGACCA AGTTTCTTCT CTCTTGATTT GGCCTCTTCA GCTTAGTGTT ACACATCAGG CCTTCTTGTT GAACTACTTG 002560
002561 ATCTGCATTG AGAAAAGACA CATTTATCGT TCCAGTAAAA GGGCCCATGG ATGAAAGGCC TCTAGCACCA AGTGCAAAAT 002640
002641 TGCCCTTTAA ATGCAACAGA CAAGACCTAG AGAAGAAAAC AGACACGGTC AAAATGGCTG GAGGTACAAG AGGAGCAGAG 002720
002721 CCCAGCAGGC TTCATTTTAC TGCCCCGTAT TCTCCTTTGT ACCCCTGTGG TCCTAGGGAA ATGGGGGGAC CCTGAGGATA 002800
002801 CAGATTCTTT CTGCAGAAGC TCCCGGAAGA CTGGCCCAGC CCCAGCCAGT CAGGACTGAT GATGCGCAAA CCTCACACTA 002880
002881 AATACTGGCT TTTGTTCCAT ACGTACTGAA AGGGAAAACC ACCACTCTGG GAATGACTTC TACAAAAACC ACCAGCCCTT 002960
002961 TCTCATCCAC GTTCATTCAA TGTACATTTA TGACACCCTG CCTCCCACGC AGCTTTACAA GAACTTAAGA GAAGTATAAC 003040
003041 ATGTCTTGGC AGATCAGGAG GAAGGCTATA GGAGCTGGCG CCCGGGGAAC ACTGGGGATT TTGGTCATGT TTACTATTTA 003120
003121 GTGAAAATAA AAATTATAAA TCGCT
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Predicted Small Protein

Name ENST00000577270.1_smProtein_2606:2794
Length 63
Molecular weight 6803.763
Aromaticity 0.0645161290323
Instability index 49.4209677419
Isoelectric point 9.13726806641
Runs 7
Runs residual 0.0407373271889
Runs probability 0.028667322785
Amino acid sequence MDERPLAPSAKLPFKCNRQDLEKKTDTVKMAGGTRGAEPSRLHFTAPYSPLYPCGPREMG
GP
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHLLLEEELLLLLLLLLLLLEEEELLLLLLLLLLLLLLL
LL
PRMN -
PiMo -