ENST00000577270.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000577270.1 |
Source |
Gencode19 |
Same with |
lnc-MRC2-1:3,NONHSAT055174 |
Classification |
intergenic |
Length |
3145 nt |
Genomic location |
chr17+:60783595..60815276 |
Exon number |
3 |
Exons |
60783595..60783830,60803389..60803512,60812492..60815276 |
Genome context |
|
Sequence |
000001 AGCTTTAGTC CCTGGGACCG TTTCTGTGCC CAAGGAGAGG GAGGGCAGGG GAAGGATGGA ATTTCATCTA GAGTAGCAGG 000080
000081 TCCTGGTTGC CTGGTAAATT ATGCATCAGG ACTGGGCTAG CCACTGCCTC CGTTTTCTCT GGGCTCCTGA GATAACCTCC 000160 000161 ACCTGCCTCT AGATTCTGTG CCAGCTGATC GTTATCTATC TCATCAACTC TTGTTCCATC AGGAAACTGC ATCTTGGTGG 000240 000241 ATGATGAACC AATAAACCTG GACACAATCT CCCGAATAAC ACCACACATG CCAACAAATG ACATCAGCAT TCCAGAATGT 000320 000321 AAGCGGCTGG AATCTGATGA AGATAAGAAC TAACGAAAAT CCCACATGAG TCATGCTAAT ATACACAAAG AGGGCTCAAA 000400 000401 TTCCAAGAAT CAATTTCCAG ATCAGTAAGC CAAGATCAGA GCATGGTAAA CACCTATCAT AAATGAAATG GTAGAATCCT 000480 000481 GACATGGTGT TTAATGATGG CTTTACAAAG TATCACATTT CATAGCTGTG AACTATCCCC AAATCATCTC ACAAAAAAGG 000560 000561 AAAGATCAAA GAAAAGGGCA ATTCAGAAAA GATCTTATTT CTCTCTCTCT CTTGCATGAA AAAGAGCACA TAAAATAGAA 000640 000641 GCAGTGGTTA CCCCAGCGTG GCCCTTCAGA GAACCGAGGT AACTATGGTA ACTAAGAACG GTCTTTTAGT TCGCAAGGTT 000720 000721 CGAATTCTAG AACTGTTGGT TGGATTTGGG GTAAGTCCCA TAAGGGAGAG CTGCGAACTT CAAGTGTGGA CTGGTTCATT 000800 000801 CTCTAGGGAG ATAGCAACCT TTTCCTAAAA AATCTTGGTT CTTCATTGCT GGAGAGAAGA ACAAGCCCTG TGAAGCAGTC 000880 000881 AGAGATCCTT ATACCCAGCA GACTTAAGGG TGTGGTATTC AAGGAAAAAA ACACTTTGGG AAATAGAGAA GAAACTGATC 000960 000961 AGGAACACCA GACTTTTCTT TATAAATACG TATATTTTAA GAGCAACAAA ACAGAGACAA TTTTCTCAAA ATAAGCAACC 001040 001041 ACTAAAATGT CAAGGAAGGA CCCATTTATG ACTTAAAATT CCCATGGCTC TCTAACGAAA GCAATGCTAA TTTTGGCCTT 001120 001121 GGGAAAGTGG AAAAAATATA TAATTATGAA AAGTCCTCAC CTTTCTTGCA ATTTCTTGAG TTTCTCAGGG TCTGCCTTTA 001200 001201 TCTTACTGGT TTCCTTTTCA TCTGTGAAAC CAGAGGCTGC CATCCTGCTC CCATTATCAT TTTGATTTGG GAAATGAGAC 001280 001281 ACTGCAAAGA AAGTAAATGG TGTATTTTCT TGCAGAGACC CAGACACATG CAAATGGCCT TCTGAGTTCA TTCTTGATGG 001360 001361 AGAGGAGCTG GAAGAATCCA CTAAGGACAA ATTGCCCTGT GGATTTAGTA AGAGATCTGT ATATAGTGGA GCCCCCTGAG 001440 001441 GCTGGCTTGT TAAAGTAGTA TCTTCTGCTT CCCTGACAGC AAATTCGTGT GCACTGTTTA CTGGGAAATA ATTATGGTTT 001520 001521 TCGGCACTGG CAAATGGAGT CCTATTTCTA ATGGGAGACA GTGGTTGGCA AACATGAAAC CCTGAGTTTC CCTCTGAGTC 001600 001601 TGAGCTGTGA ACTGAAGTCG ATGACATTGA CAAGTCTACT GGAATATCAT CTCTCAGAGC AGAATGCATG AATGATGCAG 001680 001681 GAGGGTTATA GGATGAATTC ACTGATGATC TTGGAGATAT TGGTCTGCCA GAAATAAAGT AGTCAAGAGA ATTTTGAGAA 001760 001761 CTGTTTAAAT AGTCTTTCCA GTATCCTTCA GAATCATGGG TGCCAGGCCT ATGTTCCACA GAAATACAAT CACTCCATAC 001840 001841 ATTTTCAGCA TTGACACCAA CCTCTTGTCT GGGCTCGGAT TTGGTGTCCC ACGAAAGAGG GCTCTTTTTC GCATTTTCAC 001920 001921 TGCCACCTCT GTCCTTCTCT GTAGCAGATT CCCTATCAGG CAGCCCGGGG TCTTGGGACA ACCTTTGCCC AGCAGAAGGC 002000 002001 CGCTCTGTTG CTGGCTCCAT TGCATTGCTT ATTCTCAATG AGCCATGACT GGGCTCACTT CTTCTTGAAG AATGACCTCT 002080 002081 GCAATTTTCA GCATTTTCTT CAAAATTTTT ATTTTTGGCC TGAGGGGTCG ATGTCCCCCC AAATCTACTT CTTTTGTGAT 002160 002161 GGGAAGGAGA ACAGGGTGAG CGCACACCAA CCCACAGACA TTCTTCAGAC TGGGTTTCCT CTTCAGTGTC ATCGCTTTCT 002240 002241 CTTCTGCTGT TCAATGACAA AATGGAATAA AAGTCTTCAT CTCGGAACCT AAATGATGCC TTTCTTGGCC CTCCTACAGT 002320 002321 GGTGGGTGTG AGTGGTGGCC CCGAGAACTC ACTCAATACT TGAGGACTAT TTTTTCCTTG GAAGGCCTGG GACAGGGCTG 002400 002401 GATGCAGCTC ACTCTGGGAA GGAGCACTCG GGTCTCCTTT TTTGGCTCTA TCAGGGGCGT TCTCAGTCAT TGGCTGTGAC 002480 002481 GATGGGACCA AGTTTCTTCT CTCTTGATTT GGCCTCTTCA GCTTAGTGTT ACACATCAGG CCTTCTTGTT GAACTACTTG 002560 002561 ATCTGCATTG AGAAAAGACA CATTTATCGT TCCAGTAAAA GGGCCCATGG ATGAAAGGCC TCTAGCACCA AGTGCAAAAT 002640 002641 TGCCCTTTAA ATGCAACAGA CAAGACCTAG AGAAGAAAAC AGACACGGTC AAAATGGCTG GAGGTACAAG AGGAGCAGAG 002720 002721 CCCAGCAGGC TTCATTTTAC TGCCCCGTAT TCTCCTTTGT ACCCCTGTGG TCCTAGGGAA ATGGGGGGAC CCTGAGGATA 002800 002801 CAGATTCTTT CTGCAGAAGC TCCCGGAAGA CTGGCCCAGC CCCAGCCAGT CAGGACTGAT GATGCGCAAA CCTCACACTA 002880 002881 AATACTGGCT TTTGTTCCAT ACGTACTGAA AGGGAAAACC ACCACTCTGG GAATGACTTC TACAAAAACC ACCAGCCCTT 002960 002961 TCTCATCCAC GTTCATTCAA TGTACATTTA TGACACCCTG CCTCCCACGC AGCTTTACAA GAACTTAAGA GAAGTATAAC 003040 003041 ATGTCTTGGC AGATCAGGAG GAAGGCTATA GGAGCTGGCG CCCGGGGAAC ACTGGGGATT TTGGTCATGT TTACTATTTA 003120 003121 GTGAAAATAA AAATTATAAA TCGCT |
Predicted Small Protein
Name | ENST00000577270.1_smProtein_2606:2794 |
Length | 63 |
Molecular weight | 6803.763 |
Aromaticity | 0.0645161290323 |
Instability index | 49.4209677419 |
Isoelectric point | 9.13726806641 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.028667322785 |
Amino acid sequence | MDERPLAPSAKLPFKCNRQDLEKKTDTVKMAGGTRGAEPSRLHFTAPYSPLYPCGPREMG GP |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHLLLEEELLLLLLLLLLLLEEEELLLLLLLLLLLLLLL LL |
PRMN | - |
PiMo | - |