ENST00000582787.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000582787.1 |
Source |
Gencode19 |
Same with |
lnc-SP6-2:1 |
Classification |
intergenic |
Length |
496 nt |
Genomic location |
chr17-:45968621..45973178 |
Exon number |
3 |
Exons |
45968621..45968947,45971266..45971324,45973069..45973178 |
Genome context |
|
Sequence |
000001 GCCCCAGAAA TAGCATATAC ATTGCGCCCT AAGTCCAGTC TCGCCCAGGT GTGGCAGGAG CTTTTACCTG CTCTTCGGCA 000080
000081 GTAGCCGGCT GCCACTCAAC CCCATGCCTG ACTGAGCTGT GGTAGAAGGA TTGAGGCCAG CACAGAGGAG GATCAGCAGG 000160 000161 AAATGTAAGG GTTGTCCTCA TCTAATCCGT CAGTACCAGA CAGTGAACAT CTCTCCCCCA GGATGCTGAG GGAGGGTCCT 000240 000241 GGAGGGAAGG ATGTGGAACT ACAGCCTCTG CTCTCAAGAA GCTCAGATCT GGGCAGGGAA CATCACATAC CAGGGCTGTC 000320 000321 TGTCGGGGGG GTGGAGGGCT GGGGGAGGGA TAGCATTAGG GGAAATACCT AATGTAAATG ACAAGTTGAT GGGTGCAGCA 000400 000401 AACCAACATG GCACATGTAT ACCTATGTAA CAAATCTGCA TGTTGTGCAC GTGTACCCTA GAACTTAAAG TATAATTAAA 000480 000481 AAAAAAAAAA GCTTCA |
Predicted Small Protein
Name | ENST00000582787.1_smProtein_407:460 |
Length | 18 |
Molecular weight | 1866.2589 |
Aromaticity | 0.0588235294118 |
Instability index | 58.3470588235 |
Isoelectric point | 8.65679931641 |
Runs | 5 |
Runs residual | 0.00735294117647 |
Runs probability | 0.0103868574457 |
Amino acid sequence | MAHVYLCNKSACCARVP |
Secondary structure | LLEEEELLLLHHHLLLL |
PRMN | - |
PiMo | - |