ENST00000583314.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000583314.1 |
Source |
Gencode19 |
Same with |
lnc-TYMS-3:1,NONHSAT056862 |
Classification |
antisense |
Length |
1714 nt |
Genomic location |
chr18+:735746..737459 |
Exon number |
1 |
Exons |
735746..737459 |
Genome context |
|
Sequence |
000001 TTGGGTACAG TGCAAGATGC TTGGGTGATG GGTGCACTGA AATCACCACT AAAGAACTAG TTTCCCAAAA ACTATTGAAA 000080
000081 AAAAAAGTGG CAGCTAAATT AGGCCCTAAA GAATGGTTAG GATTTTCACA TGTAAAGATT ACAGGCCGGG CATGGTGTCT 000160 000161 CACGCCTGCC ATTTTAGCAC TTTGGGAAGC CAAGGCAGGA GGACTGCTTG AGCCCAGAAG TTCGAGACCA GCTTGGGCAA 000240 000241 CATGGCAAAA CTTCGTCTCT ACAAAAAATA CAAAGAATTA GTCAGGCGTG GTAGTGTGCA CCTGTAGTTC CAGCTACTCA 000320 000321 GGAGGCTGAG GTGGGAGGAT CACCTGAGCC CCAGGAGGTC AAGGCTGCAG TGGGCTGAAA TCACGCCACT ATACTCTAGC 000400 000401 CTGAGCAACA GAGGGAGACC CTATCTCGAA AAACAACAAC AACAACAAAC ATTACAGATA GGAAGGCATT CCAGATGGAG 000480 000481 GTAACTGTAC AGAAGTATGG AGGTTGAAAG AAAGCACTAT GTCTAAAGCA GGGTTTCTCA ATCTCAGCAC CGCTACCATT 000560 000561 TTGGGCCTGA TAATTCTGTT GTGGGGGGAA GGGGGGGTTT GCCTGCACAT TTCTGTACAC TGTAGGAGGT TCAGCAGTAT 000640 000641 ACCTGGCCTC TACCCACTAG ATGTCAAGCA GTAGCCCCCA GGTTGTAACC ACCAAAAAAG TCTGTAGACA TTGTCAGATG 000720 000721 TCCCCTGGTG AGTGGCGGTA CAGGGCAATA TCTCCTCTGA CTGAGAACCT CTGGCCTTTC TAGGAAAGAA ATTAAAATAT 000800 000801 ATTTGTTGTC ATGTCAAAAG AAGTGTAAAG AGGCTACTAC TTGCTCTATG TATAATGCAA AGGATACCTA GTCAAGTTCT 000880 000881 TTCTTGGAGG AAATAACTAT CAGAAAGCCA CAGCAGTACA TGATTTTATG AATGAAATCA ATGTCTCTAT GACTCTTCTG 000960 000961 AGGGAAGCTA AAACAATTCT TATTCTGGAA AACCCTGTAT AGTCAAGAGA GTTAAGCAAA ACACACAACA CATTACAAGC 001040 001041 TTTTATGTAA AAGTAATTTT ACCTTGTCTT GCTGTGTATT CATTGTCTTC AATTAACCTT GCTAAACCAA AGTCTGCTAT 001120 001121 TTTGCACACA AGATTTTCTC CTACAAGAAT ATTAGCAGCC CGAAGATCTC GGTGAATATA GTTCATTCTT TCAATATATG 001200 001201 CCATACCATC AGCAATCTTG GAAAGAGAAA AACAAAAAAC ACAAGACATA CGATACAAAG GGAAGCAGAG AGAAGACAAT 001280 001281 TATGGTTAAT ATCAAATTGT GTCACTGAAA ATCATATTAT TTTAGAAGGA GATGATGGTA ACAGGGTATA GTCTAGAAGA 001360 001361 TAACAGGAAA ACCAGAAAAC ATAATAAAAA TGCAGGCTAA ATTCAGATTT CAAAAATCTA ACACTGGCTG GGTGCGGTGG 001440 001441 CCCACACCTA TAATCCCATT AATTTGGGAG GCCGAGGCAG GTGGATCATT TGAGGTCATG AGTTCGAGAT CAGCCTGGCC 001520 001521 AACACGGTGA AACCCTGTCT CTATTAAAAA TACAAACATT AGCTGGGTGT GGTGGCACAT ACCTGTAGTC CCAGCTACTT 001600 001601 GGGAGGCTGA GGCAGGAAAA TCACTTGAAC CCAGGAGGCA AAGGTTGCAG TGAGCCAAGA TTGTGCCACT GCACTCCAGC 001680 001681 CTGGGAAACA GAGCGAGACT CAGCCTCAAA AAAA |
Predicted Small Protein
Name | ENST00000583314.1_smProtein_518:673 |
Length | 52 |
Molecular weight | 5526.5433 |
Aromaticity | 0.078431372549 |
Instability index | 62.8490196078 |
Isoelectric point | 8.84234619141 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.038143185202 |
Amino acid sequence | MSKAGFLNLSTATILGLIILLWGEGGVCLHISVHCRRFSSIPGLYPLDVKQ |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHLLLLEEEEEEEELEEELLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii |