ENST00000583314.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000583314.1

Source

Gencode19

Same with

lnc-TYMS-3:1,NONHSAT056862

Classification

antisense

Length

1714 nt

Genomic location

chr18+:735746..737459

Exon number

1

Exons

735746..737459

Genome context

Sequence
000001 TTGGGTACAG TGCAAGATGC TTGGGTGATG GGTGCACTGA AATCACCACT AAAGAACTAG TTTCCCAAAA ACTATTGAAA 000080
000081 AAAAAAGTGG CAGCTAAATT AGGCCCTAAA GAATGGTTAG GATTTTCACA TGTAAAGATT ACAGGCCGGG CATGGTGTCT 000160
000161 CACGCCTGCC ATTTTAGCAC TTTGGGAAGC CAAGGCAGGA GGACTGCTTG AGCCCAGAAG TTCGAGACCA GCTTGGGCAA 000240
000241 CATGGCAAAA CTTCGTCTCT ACAAAAAATA CAAAGAATTA GTCAGGCGTG GTAGTGTGCA CCTGTAGTTC CAGCTACTCA 000320
000321 GGAGGCTGAG GTGGGAGGAT CACCTGAGCC CCAGGAGGTC AAGGCTGCAG TGGGCTGAAA TCACGCCACT ATACTCTAGC 000400
000401 CTGAGCAACA GAGGGAGACC CTATCTCGAA AAACAACAAC AACAACAAAC ATTACAGATA GGAAGGCATT CCAGATGGAG 000480
000481 GTAACTGTAC AGAAGTATGG AGGTTGAAAG AAAGCACTAT GTCTAAAGCA GGGTTTCTCA ATCTCAGCAC CGCTACCATT 000560
000561 TTGGGCCTGA TAATTCTGTT GTGGGGGGAA GGGGGGGTTT GCCTGCACAT TTCTGTACAC TGTAGGAGGT TCAGCAGTAT 000640
000641 ACCTGGCCTC TACCCACTAG ATGTCAAGCA GTAGCCCCCA GGTTGTAACC ACCAAAAAAG TCTGTAGACA TTGTCAGATG 000720
000721 TCCCCTGGTG AGTGGCGGTA CAGGGCAATA TCTCCTCTGA CTGAGAACCT CTGGCCTTTC TAGGAAAGAA ATTAAAATAT 000800
000801 ATTTGTTGTC ATGTCAAAAG AAGTGTAAAG AGGCTACTAC TTGCTCTATG TATAATGCAA AGGATACCTA GTCAAGTTCT 000880
000881 TTCTTGGAGG AAATAACTAT CAGAAAGCCA CAGCAGTACA TGATTTTATG AATGAAATCA ATGTCTCTAT GACTCTTCTG 000960
000961 AGGGAAGCTA AAACAATTCT TATTCTGGAA AACCCTGTAT AGTCAAGAGA GTTAAGCAAA ACACACAACA CATTACAAGC 001040
001041 TTTTATGTAA AAGTAATTTT ACCTTGTCTT GCTGTGTATT CATTGTCTTC AATTAACCTT GCTAAACCAA AGTCTGCTAT 001120
001121 TTTGCACACA AGATTTTCTC CTACAAGAAT ATTAGCAGCC CGAAGATCTC GGTGAATATA GTTCATTCTT TCAATATATG 001200
001201 CCATACCATC AGCAATCTTG GAAAGAGAAA AACAAAAAAC ACAAGACATA CGATACAAAG GGAAGCAGAG AGAAGACAAT 001280
001281 TATGGTTAAT ATCAAATTGT GTCACTGAAA ATCATATTAT TTTAGAAGGA GATGATGGTA ACAGGGTATA GTCTAGAAGA 001360
001361 TAACAGGAAA ACCAGAAAAC ATAATAAAAA TGCAGGCTAA ATTCAGATTT CAAAAATCTA ACACTGGCTG GGTGCGGTGG 001440
001441 CCCACACCTA TAATCCCATT AATTTGGGAG GCCGAGGCAG GTGGATCATT TGAGGTCATG AGTTCGAGAT CAGCCTGGCC 001520
001521 AACACGGTGA AACCCTGTCT CTATTAAAAA TACAAACATT AGCTGGGTGT GGTGGCACAT ACCTGTAGTC CCAGCTACTT 001600
001601 GGGAGGCTGA GGCAGGAAAA TCACTTGAAC CCAGGAGGCA AAGGTTGCAG TGAGCCAAGA TTGTGCCACT GCACTCCAGC 001680
001681 CTGGGAAACA GAGCGAGACT CAGCCTCAAA AAAA
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Predicted Small Protein

Name ENST00000583314.1_smProtein_518:673
Length 52
Molecular weight 5526.5433
Aromaticity 0.078431372549
Instability index 62.8490196078
Isoelectric point 8.84234619141
Runs 7
Runs residual 0.0169869928169
Runs probability 0.038143185202
Amino acid sequence MSKAGFLNLSTATILGLIILLWGEGGVCLHISVHCRRFSSIPGLYPLDVKQ
Secondary structure LLLLLLLLLLHHHHHHHHHHHHLLLLEEEEEEEELEEELLLLLLLLLLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii