ENST00000583493.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000583493.1

Source

Gencode19

Same with

lnc-CCDC102B-8:1,NONHSAT059718

Classification

antisense

Length

3289 nt

Genomic location

chr18+:65173826..65181267

Exon number

2

Exons

65173826..65174116,65178270..65181267

Genome context

Sequence
000001 GCTTTTAGCT TTTTATTTTT GTATTAACAG GAGTCTTATT ACACATAGGT CTGATAAAAC TGGTTTATGA TCTTCAGTCT 000080
000081 GTTTCCAGTG CTGCATAACT AGATAACGTA TGAAGGAAAA ACGACGACGA ACAAAAAATT AATTGCTTGG AAGACTTAGT 000160
000161 TGAATCTATC CATGAAAACA GAATCAATTA AACATGTATG TGTTACTTAG ACTAAATATA AATAACCCAT ATAAATGGTA 000240
000241 GCTCAAACAT CTCAAGTGTT TCAGAGAATG TTAGAATCTA TTGTTTGAAG TTTTAATTTC ATCTCTAGGC AAGTTCTGTT 000320
000321 TCCAAACATT AGTATTAGTT GGTGATATTT CCCCTTCATA GGGAAGGTAA AAAAGGTTTG TAGAGGTGGC AAACAATATT 000400
000401 TGGTTTAAAC TAGCAGGAGA CAAAGGAATT CCAAGAAAGG CAAAAATCCT TTCAGTAGTT TTCTGAGGAA AATGCACAAT 000480
000481 ATCTTCAAAC TTGACCAGCT GGTAGCTAGT AGGCAGCAAA TCTGTATTTA TTCTCAAGGC TGCTGCTGTA TTTGCTAGCC 000560
000561 ACAAGTGAGA CAAGAGGGAC ACTGCATTTG ATTTGGATTT TGATAATTCT TTCCTCAATG GTTCATACTC GAAAGCATAA 000640
000641 CCCGAATTTA AGTTACATTT GCCTTTACCT CCCTCTATTT TAAACAATTT TGCTAAATGC TCTGGTACAT TCTTCAAAGA 000720
000721 ATAAAGACTT GGTTTACTAT TGTACAACAT TGAATAAATC CATGCCCGAG GGTCTCTTAC TATGTACAAT GCCCTCATCG 000800
000801 AAGCTCCTAA AACTTCCTGA AAAAAATGAA GCTTTAACGT CCAGCTTCCA CTGCTTAAAC TGAGCACAGG ACGTGCACTT 000880
000881 GGATAGTAAA CCAGGTGTCT CCTCAAAGCC CTAATATATT CAGCATCTCT ATCAAAGGCG CCTTTCATTT GACTTCTTTG 000960
000961 TTCTGGCAAA GACTCTCTCC TTTTAAATTT TCTTTTTTTG TCCTTATTCA TTGCAAAATA TTGGGCCAGT TTACCCCTAT 001040
001041 TGGGTTCATG CAGATGGATG TTTTGCAAAT GTAATTTTGT GTCCTGGACT AAAGACTGCA ACCAGCCTCG GAGTAAACGA 001120
001121 AAATGCCCAC TGCGGATATC TGACACCTTC CATTCACAAG CATCTACAAA TGAGTCGATT TCCAACTCAG TTTCAGGAAT 001200
001201 ATCAATGTAG GCTGTAGGAA CCCTGATGTA GAGAAAATCA CTACTGTTGA AAAAAAGTTG TTTGAGAATT TCAGCTCCTG 001280
001281 AACCAGGAAG TGAGGTAATG ACAACATCAG GAAGATCCAT GTGGTGCCCT TCAGAAGACA AAGACTTCTT GCTTCCCTCA 001360
001361 GCCTCTGTCC TTGTCCATTT TGCACAAATG GGCTGACTAC AAGTGCTCCA CACATCCAAA AGCTCAATAA ACCACAAGGC 001440
001441 AATAACAAGT ATTAATATCC ATCGCATTAG TTTTCTAAAA GAAAGGTAAA AACGCCATTG GAAAGTTAAA ATCACCAAGC 001520
001521 TAATGCACAA AATTAATCCA ACTGCTATAT TAAATTTAAA TCCAAAGGGG AAAATAATCC TATCATGTCT TACAGGCTTT 001600
001601 ACTATTGCTT GAGTGCCCAA ACCAAATCGG GTTATTTGGC CTTGATCAGC CACACTGGCA AAGCCACCGA ATCCCAGATA 001680
001681 ATTGAATCTT GTCTTCAGGT TATGGTAATC AGTTACAATA GAAACAACAT GTTCAGTATT ATTGACATTG AGAGAAATCT 001760
001761 GAAGTCCAGG ATTGGAACTA TCAATAAATC TGCAGCTGGA GACATTGATA TATGGCCCAT AAAAGACATA TGCAATTCTT 001840
001841 GTGATTGTGG GTTCCATCTG AAAAGTAACA TTAACAAATT GAGTCCATCG TTTTTTAAAT TCAGCAGCTT GCTCTGCTTC 001920
001921 CTGTATACTG GCCATGGGAC TATTGCCATG ATGATCAAAC CAAAACATTT TGTAATGTGC ATCCCACACA TCCATCATGG 002000
002001 CACCATTATA CCTATTCATA AACTTATATG GGATATATTT AAAATCAATA TCCAAATTAT GAAAGAAGGC ACTGACAGAA 002080
002081 TTTATTGGGG AATCTTCTTG CCTCTCAATA TGATCAACAA CTAGCAGAGT TTGGGAATTT AAGAGAAGCA AAGCACGATA 002160
002161 TACACTTTTC AGTCTCATTG CTGAAGAATA AGCAGACACG GCTTCCCCAC TCACAAATAC CATTTCCCCA TGTTGAGAGG 002240
002241 CAGTGATTAT TTCCCCAGCT GCATCACCAA CCTCCTCGCC AGTCCACTTA AGCCACTGCG CACATTCTCC CAGTTGACCT 002320
002321 TCCCAGGGCT TATTACACTG GCTTGAGGGT GATGGAGCAA ACACCAATAC ATTGTTAAGG TGGCTCAACT TGGGTCCATA 002400
002401 GAGAGCTTCA GAAACAAATA CTTGTCCATT GGGGGCAAAA GTAAATGAGT TCTGATCTGG ATGCTCATGT CCTGGGTTAA 002480
002481 AACTTCTCCA CCCATCAATC CAGGAATATG GCTGAAAATG AACTATGTCA TACACAGCTC GTCCCCCCAG CTTCCCAGAT 002560
002561 TTAAAAGACA CAAAGGTGTT GGTCTGTGTG TTTGGCAACC CAGCCCCATA AGTAACCACA CCCCAGTTAG GGAATGTGTG 002640
002641 TATTTTTGCA GTACCATAAT CAGCAGGTGG CTGTGGTGTG AGCTGGGGAT CATACCAGAT GTATTCAGTG TGAAGAGTAC 002720
002721 TCCACCTTTG GGCAGTTGAA GGAACCATCG GTCCATCTTT AGGTCGGTGC TTTCTAATTT GCTGAGCTAA CCAATTTCCA 002800
002801 GCTCCATTCT TTAAGATGAA CTTATCCAAG AAAACTAGCT GGCTTTCTGG ACCATAAAAC CAATTATAAT TGGAATCTGC 002880
002881 TATACCCACA GTTCTTTGGA AGCCAGGTAA AAGGGTGGCA TAATAGAACC AAAAGTGCAT CTTTAACCAG TTATTATCCA 002960
002961 AGTTGTTGAT ATTAAAATGG CGCTGGGCCA GAAAAACATA CTGTGTGACG GATTTAGCTG TGTAGCTTCC ATAGGCCACA 003040
003041 CCTTCATCCA AAGAACCATC AACAATATGA TTCAATAGAA ACATTGTCTT TTCCATGACA TCCACTACAG CCTGTTTCCA 003120
003121 TATATTTGCT TTAGATCCTT TATCTACTCC AGTCACCAAG GCCCCTGTGA GTAATGCTAT CATATTAGTG GCTTGGTGGT 003200
003201 TATGGAGAAG CTGTTTGCCC CATGAGCGGA CCTTGGAATA CTCGTACATT TCCTCAGTAA TAACCCATAT TTTTTCCAGG 003280
003281 TATTTTTGT
[back to top]

Predicted Small Protein

Name ENST00000583493.1_smProtein_761:862
Length 34
Molecular weight 3646.3229
Aromaticity 0.030303030303
Instability index 78.203030303
Isoelectric point 6.51324462891
Runs 7
Runs residual 0.0279973649539
Runs probability 0.0386100386101
Amino acid sequence MPEGLLLCTMPSSKLLKLPEKNEALTSSFHCLN
Secondary structure LLLLLEEELLLLHHHLLLLHHHHHHHHLLLLLL
PRMN -
PiMo -