ENST00000583493.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000583493.1 |
Source |
Gencode19 |
Same with |
lnc-CCDC102B-8:1,NONHSAT059718 |
Classification |
antisense |
Length |
3289 nt |
Genomic location |
chr18+:65173826..65181267 |
Exon number |
2 |
Exons |
65173826..65174116,65178270..65181267 |
Genome context |
|
Sequence |
000001 GCTTTTAGCT TTTTATTTTT GTATTAACAG GAGTCTTATT ACACATAGGT CTGATAAAAC TGGTTTATGA TCTTCAGTCT 000080
000081 GTTTCCAGTG CTGCATAACT AGATAACGTA TGAAGGAAAA ACGACGACGA ACAAAAAATT AATTGCTTGG AAGACTTAGT 000160 000161 TGAATCTATC CATGAAAACA GAATCAATTA AACATGTATG TGTTACTTAG ACTAAATATA AATAACCCAT ATAAATGGTA 000240 000241 GCTCAAACAT CTCAAGTGTT TCAGAGAATG TTAGAATCTA TTGTTTGAAG TTTTAATTTC ATCTCTAGGC AAGTTCTGTT 000320 000321 TCCAAACATT AGTATTAGTT GGTGATATTT CCCCTTCATA GGGAAGGTAA AAAAGGTTTG TAGAGGTGGC AAACAATATT 000400 000401 TGGTTTAAAC TAGCAGGAGA CAAAGGAATT CCAAGAAAGG CAAAAATCCT TTCAGTAGTT TTCTGAGGAA AATGCACAAT 000480 000481 ATCTTCAAAC TTGACCAGCT GGTAGCTAGT AGGCAGCAAA TCTGTATTTA TTCTCAAGGC TGCTGCTGTA TTTGCTAGCC 000560 000561 ACAAGTGAGA CAAGAGGGAC ACTGCATTTG ATTTGGATTT TGATAATTCT TTCCTCAATG GTTCATACTC GAAAGCATAA 000640 000641 CCCGAATTTA AGTTACATTT GCCTTTACCT CCCTCTATTT TAAACAATTT TGCTAAATGC TCTGGTACAT TCTTCAAAGA 000720 000721 ATAAAGACTT GGTTTACTAT TGTACAACAT TGAATAAATC CATGCCCGAG GGTCTCTTAC TATGTACAAT GCCCTCATCG 000800 000801 AAGCTCCTAA AACTTCCTGA AAAAAATGAA GCTTTAACGT CCAGCTTCCA CTGCTTAAAC TGAGCACAGG ACGTGCACTT 000880 000881 GGATAGTAAA CCAGGTGTCT CCTCAAAGCC CTAATATATT CAGCATCTCT ATCAAAGGCG CCTTTCATTT GACTTCTTTG 000960 000961 TTCTGGCAAA GACTCTCTCC TTTTAAATTT TCTTTTTTTG TCCTTATTCA TTGCAAAATA TTGGGCCAGT TTACCCCTAT 001040 001041 TGGGTTCATG CAGATGGATG TTTTGCAAAT GTAATTTTGT GTCCTGGACT AAAGACTGCA ACCAGCCTCG GAGTAAACGA 001120 001121 AAATGCCCAC TGCGGATATC TGACACCTTC CATTCACAAG CATCTACAAA TGAGTCGATT TCCAACTCAG TTTCAGGAAT 001200 001201 ATCAATGTAG GCTGTAGGAA CCCTGATGTA GAGAAAATCA CTACTGTTGA AAAAAAGTTG TTTGAGAATT TCAGCTCCTG 001280 001281 AACCAGGAAG TGAGGTAATG ACAACATCAG GAAGATCCAT GTGGTGCCCT TCAGAAGACA AAGACTTCTT GCTTCCCTCA 001360 001361 GCCTCTGTCC TTGTCCATTT TGCACAAATG GGCTGACTAC AAGTGCTCCA CACATCCAAA AGCTCAATAA ACCACAAGGC 001440 001441 AATAACAAGT ATTAATATCC ATCGCATTAG TTTTCTAAAA GAAAGGTAAA AACGCCATTG GAAAGTTAAA ATCACCAAGC 001520 001521 TAATGCACAA AATTAATCCA ACTGCTATAT TAAATTTAAA TCCAAAGGGG AAAATAATCC TATCATGTCT TACAGGCTTT 001600 001601 ACTATTGCTT GAGTGCCCAA ACCAAATCGG GTTATTTGGC CTTGATCAGC CACACTGGCA AAGCCACCGA ATCCCAGATA 001680 001681 ATTGAATCTT GTCTTCAGGT TATGGTAATC AGTTACAATA GAAACAACAT GTTCAGTATT ATTGACATTG AGAGAAATCT 001760 001761 GAAGTCCAGG ATTGGAACTA TCAATAAATC TGCAGCTGGA GACATTGATA TATGGCCCAT AAAAGACATA TGCAATTCTT 001840 001841 GTGATTGTGG GTTCCATCTG AAAAGTAACA TTAACAAATT GAGTCCATCG TTTTTTAAAT TCAGCAGCTT GCTCTGCTTC 001920 001921 CTGTATACTG GCCATGGGAC TATTGCCATG ATGATCAAAC CAAAACATTT TGTAATGTGC ATCCCACACA TCCATCATGG 002000 002001 CACCATTATA CCTATTCATA AACTTATATG GGATATATTT AAAATCAATA TCCAAATTAT GAAAGAAGGC ACTGACAGAA 002080 002081 TTTATTGGGG AATCTTCTTG CCTCTCAATA TGATCAACAA CTAGCAGAGT TTGGGAATTT AAGAGAAGCA AAGCACGATA 002160 002161 TACACTTTTC AGTCTCATTG CTGAAGAATA AGCAGACACG GCTTCCCCAC TCACAAATAC CATTTCCCCA TGTTGAGAGG 002240 002241 CAGTGATTAT TTCCCCAGCT GCATCACCAA CCTCCTCGCC AGTCCACTTA AGCCACTGCG CACATTCTCC CAGTTGACCT 002320 002321 TCCCAGGGCT TATTACACTG GCTTGAGGGT GATGGAGCAA ACACCAATAC ATTGTTAAGG TGGCTCAACT TGGGTCCATA 002400 002401 GAGAGCTTCA GAAACAAATA CTTGTCCATT GGGGGCAAAA GTAAATGAGT TCTGATCTGG ATGCTCATGT CCTGGGTTAA 002480 002481 AACTTCTCCA CCCATCAATC CAGGAATATG GCTGAAAATG AACTATGTCA TACACAGCTC GTCCCCCCAG CTTCCCAGAT 002560 002561 TTAAAAGACA CAAAGGTGTT GGTCTGTGTG TTTGGCAACC CAGCCCCATA AGTAACCACA CCCCAGTTAG GGAATGTGTG 002640 002641 TATTTTTGCA GTACCATAAT CAGCAGGTGG CTGTGGTGTG AGCTGGGGAT CATACCAGAT GTATTCAGTG TGAAGAGTAC 002720 002721 TCCACCTTTG GGCAGTTGAA GGAACCATCG GTCCATCTTT AGGTCGGTGC TTTCTAATTT GCTGAGCTAA CCAATTTCCA 002800 002801 GCTCCATTCT TTAAGATGAA CTTATCCAAG AAAACTAGCT GGCTTTCTGG ACCATAAAAC CAATTATAAT TGGAATCTGC 002880 002881 TATACCCACA GTTCTTTGGA AGCCAGGTAA AAGGGTGGCA TAATAGAACC AAAAGTGCAT CTTTAACCAG TTATTATCCA 002960 002961 AGTTGTTGAT ATTAAAATGG CGCTGGGCCA GAAAAACATA CTGTGTGACG GATTTAGCTG TGTAGCTTCC ATAGGCCACA 003040 003041 CCTTCATCCA AAGAACCATC AACAATATGA TTCAATAGAA ACATTGTCTT TTCCATGACA TCCACTACAG CCTGTTTCCA 003120 003121 TATATTTGCT TTAGATCCTT TATCTACTCC AGTCACCAAG GCCCCTGTGA GTAATGCTAT CATATTAGTG GCTTGGTGGT 003200 003201 TATGGAGAAG CTGTTTGCCC CATGAGCGGA CCTTGGAATA CTCGTACATT TCCTCAGTAA TAACCCATAT TTTTTCCAGG 003280 003281 TATTTTTGT |
Predicted Small Protein
Name | ENST00000583493.1_smProtein_761:862 |
Length | 34 |
Molecular weight | 3646.3229 |
Aromaticity | 0.030303030303 |
Instability index | 78.203030303 |
Isoelectric point | 6.51324462891 |
Runs | 7 |
Runs residual | 0.0279973649539 |
Runs probability | 0.0386100386101 |
Amino acid sequence | MPEGLLLCTMPSSKLLKLPEKNEALTSSFHCLN |
Secondary structure | LLLLLEEELLLLHHHLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |