ENST00000585366.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000585366.1 |
Source |
Gencode19 |
Same with |
NONHSAT058444 |
Classification |
intronic(AS) |
Length |
4745 nt |
Genomic location |
chr18-:13514519..13522887 |
Exon number |
2 |
Exons |
13514519..13516106,13519731..13522887 |
Genome context |
|
Sequence |
000001 TTTACAAACT TCGTACATAC ATTTAAGATA ACACTATCAA ATATTTGCAA AAAGCTGACA ATGAATTTCT GACTAAAATC 000080
000081 CCCCCCCAAG CCCCAAAACA CCCTAGGATT TACTGCTGGG TTTTTAAGTG TTAGGTTCAT TTAAAAGAGT AGAAAACACA 000160 000161 TTCGGCTTAG ATAAAAAAGA CAGAGCTAAA CATTCCAGAT ATGGCTTTTG TGTCTGATGC CATATCATTC TAGTCCTTTT 000240 000241 TTTGTAGCAT GTAAGCTTCT ACCTGGATGA CACAGGACAA AGACTGTTGA GGATTTCAAG CAGGTGCCAT GTTCCAGGAC 000320 000321 ATGAAGCCCA GCAAGTCAGT CACATCTCTG AAAACAGATC ACATTTGCAG TTTAAACAAA CAAACAACCC CTTAGGACCA 000400 000401 CTCAGTGCAG ATACGAGATA TGCAGACTAG CCCTTCCAAG GACCTGCAGG GGAAAGATAT GTAAAAGGCA TGCTCTTAAG 000480 000481 CAACATTATA CGATGAGGGT ACAGTGCAAT GCTACACAAA TATTAAAAAA ACAAAAAACA AAAAAAGGTC TGTTGTAGGA 000560 000561 GATTTTCTAG AATCATGTAT AATGTTCCAC TTTCAAGGGT CTGCCTGGAT AGCAGGAGGA GAGGTCCTTT GGTTCTAGAA 000640 000641 AACAGCAAGG CTACAGGCTA ATAGAGAATT ATGCAGCTTG TCCAGAGAGC AAGAAGTCAG CCTGGCCAGC CACTGCTAAA 000720 000721 AAGCAAGGCA ATGGAATGCC ACAGCATTTA TCACCTTAAA CAAAAGAAAC AGATGGGAAA TATTTTCCAG TTTTCAAAAT 000800 000801 ACTGCTTTAG GGGAAAAAAA TGATAAAAAC AAACATGTTC AACAAGTAGC ATTTGTTAAC TAAGAGCTTC ACGTGAATTA 000880 000881 CTTCACCATA ACCCTGCAAA GTAAGCACTA GTGTCCTTAG CCCACCTGCA GACAGGAGAC CAGGGCACTG CATGTTCAGC 000960 000961 CACTTGCCAT GGAGACAAAA CCAAGTCTTG GAGCTGATTA CTCACCAGCC TTAGAGAAAA CAGAGACGGC TACTAGATTT 001040 001041 CAAATTACAG TGCCAGTAAT GTCTATTACT CTTTGTATAA TTTCCTTATT TTTCCATATA TCTCATTCTC ATCTTACAAG 001120 001121 AGTGCCCATA TTTAAGATAA TTTTTGTATG CCAAAACAGA GCAGGTCACC AACATGGCTG AGAGAAAGCT CAGATGACTC 001200 001201 CTCGTCACGT GCTCATGGAA CAGACCCCGT GACAACTTCA GTTTCCAAAT CAAATGCAGC AACTGCTCCC TTCTTCCTCC 001280 001281 TCACGCCACT CATATCACAA AAGAGAGCAA TGACAGAGGA TGACTGTCAT CTTGTGGGTT TGTACCACCT CCCAAGTTAT 001360 001361 TCCACTGGCA ATCCATCCAG CACAGGTACT CAGAGAGGAC ATTAATAAGG CAATCTGTCA TACTTTCAAC TCTCCTGGTT 001440 001441 TGTTTTGCTC TATCCCATCT CTAATGAGAG CAAGTGCAAA AGCTCCTAAT GACTCCAGAT CTTCCACAAC AGGCTGATTT 001520 001521 TTACACCTGT AGCAAATCAC AAAATAGTCT AATCATGTAA ATATGCTTAA CAAGAAGGTA ATTAATCTTC TCAACCAAAT 001600 001601 TTTGCAAACA AATATTCATG GTTAAGACAC AGAACAATTC CCAAGTGTTC AGGTCCTCAT AGCTTGCAAA GCCAGGCTGC 001680 001681 ACGAGTGCCA GCGATCAAGA GTCGGTTGGG TCAGCCTCTC CCAAACTGCC CTTCATGGGA CATATGTGTT CTGCAAGCTG 001760 001761 CTAATGGGTC TTTTTCTAAA AACAAAAAGG ACTCCAAGGC TACAACAGTA GGGAGACTGA CTCATTAAGC AAAGTCTAAC 001840 001841 GGGCTTTCTG ACTCTGCAAG GCATTCACTA GGCTACCTCC AATGGCGAGT CTTCAGGAAG ACGAATTCCA GTGGCCTGTC 001920 001921 CAAGAGGTGC CGAGGGTGGG GATGTATTCT CCAACAGCAA CATCCCTTGC ATTCTCTGAC AAAGACTTTC CTGTCCTGTC 002000 002001 TTCTTAATCT CAAGTGAATG TGAGGGCTTT TTTTTTTTCA GACAGTCTCG CTCTGATGCC CAGGCTGAAG TGCAGTGGCA 002080 002081 CAATCAGGGC TCACTGCAGC CCCTAACTCT CAGGCTCAGG TGATCCTCCT GCCTCAGCCT CCTGAGTAGG TAGGACCACA 002160 002161 GACACCTGCC ACCATGCCCA GCTAATTTTT TAATTTTTAG TAGAGACGAG GTCTCCCTAT GTTGCCCAGG CTTGTCTTGA 002240 002241 ACTCCTGGGC TCAAGAGACC CTCCCATCTT GGCCTCCCAA AGTGCTGGAA TGATAGGTGT GAGACACTGT TCCCAGCCTG 002320 002321 CGGGTATTTT TAAGTTGTTC CCTCTGAGTC TCCCATCCTA AAGAACAGCT GCCCCGAGCA CTTCCTATGT GGACATTCCA 002400 002401 GGCAGCTGGG CCGTGTACAC GATGTCCTCC CGCTCTGTCT GAATATGTCA CTTCCTTTGT CAAGAGACAT CTATTAATAT 002480 002481 CTCAGCAAAC AGAGCACTAA AGATATGTAA AGTACAATTT AGGAAGAATC ACCCTAGAGT CTAGGGTGAT GGTTATTCTA 002560 002561 TACCCCACTG CTACTATTCA AGGTTCTCCC TCCTCTCGAT CAGAGGATGC CAACAGGGCC AACTTTCAGG GGAAGCTGAA 002640 002641 GACAGGCTTT AGCAGACTTG GGAAGCTGCC TCCAACTAAA CGGTGAAAAT TCGACTCATC CCCATGAATT CTTCTGAAGA 002720 002721 ATTACCAGCA ACATTTCATT GCCCAATCCC CTAACAAGTG TGTGATAAAA AAGAACTGGC AAATTATAGG GTCTATAGAG 002800 002801 GATTCTTATG GTTGAGAAAA TTCCTTGTTC TCAAGGGCAC ACACAGGTCT ACCCTCTTTT TCATGTGTAT TCATTACCTA 002880 002881 AATGCACCTG TAGCTAGTGC ATATTTTACG TAGCAAATTC CAAGTATGTT TTAAACTTTA AGCTTTTGTA CTTAACAGCA 002960 002961 TAGACTTGAG GCAACAGGAC TTAGTTATAA AATATCCTCA GAAAATTTGA AGCTCATGAA AATGAAAAAT CAATATGAGC 003040 003041 TGGTAAACCA GCACTTTTTG GGTATTTACC TGAGATAACA TGAGGTATGG TGGAAAATTT CATTTCCACT TTTTTGTTTT 003120 003121 TTAGAGACAC AGTCTCCTTC TGTCACCCAG GCTGGAATGC AATGGCTCAG GCCTGTAATC CCAGTGCTTT GGGAGGCCAA 003200 003201 GGTGGGTGGA TCACTTGAGG CCAGGAGTTC AAGACCAGTC TGAGCAACAT GGTAAGGTCC CGTCTCTACA AAAAAAAATT 003280 003281 TTTAATTAGC CAAGCATGGT GGCATGTGCC TGTAGTCGCA GCTACTTGGG AAGCTGAGGT GGGAGGATCC CTTGAGCCCA 003360 003361 GGAATTCAAA GCTGCAGTCA GCTATAATTG TGGCACTCCA GGTTGCACTC CAGCCTGGGC GACAAAGAAA GACACTGACT 003440 003441 CAAAACAAAA TGAAACGAAA CAAAACAAAA AATTTCAGGT TGCTTAAGAA ATTCCCCATA AAATGCAAAT AAATACCTCA 003520 003521 AGCAGTAGTG ATCGTAATAT AATTTAGAAA TGTTTCAGCT CTCCAAATCT TGTGTCATTG TCTGACTTAT TTATTAGGTC 003600 003601 CTTAAAAAGG TAAAATAAAG AACCATTGTT AAATGATGAA ACATAAACGT GAATTTGTAA GTCTACTGAG ATTCCTTCAA 003680 003681 GAGGCTGGCA AAACAGCAGG AACCTTTCAC CAGTGCTATA CATCTGATCA GTCACTTGCA TTACATGACA ATTTAGCATT 003760 003761 TGCTCATCTG TGTTGGTGTC TATGTGCTGT AGTTTTAGTT TTTGTTTTTT AAGACAACTG TCCTATAACC ATAAGCCATC 003840 003841 TAGGACAACC TGGCTTCAAA GTTACATTCA AAGTGACATG CAAGAACCAC CACCACTCCT TGTTTGTCTC CTGTTCTTTG 003920 003921 CTCCACATTT GGAAGCTTTT CAAAAAGCAA AGTCAGAAAT ACTCATCCTT CCTTCCCTCA TGCCTACAGG CAGCTCACCA 004000 004001 AGGATTTTGG TTTCTTTAAA ACCAATGTAA TAACAGAGGC AGGCAGAAGA AAGAATGCAC GCCAGTGTTG TGCACAAGGA 004080 004081 AGGCCTATTC GGGAGACGAA CAGAACCCAA GCCTATCGAG ACCATATGCT CCACCGCTTA CATTTGTCTT CTCTAAAGGC 004160 004161 TGACCCTTTA ACAGTTATGT AATTCAGTTA CTTCACAACC ATTTAAATAT AGCAAAATGT CCACAAAGAA AAAAAGTTGC 004240 004241 CCACCCACCT AAATACCTTC CATGCTTTGC CCACAGTGGT AATGTGGGGG TGGGGGTGGG CAAACATGCC TTTCAGTGAA 004320 004321 AGCATGGAGA GATGTTACAG TCCAGGGCTT GAAAGAGCCT CTGTCAATGG CTTGCTCACC TACAAATAGT GTAGGGTGGG 004400 004401 TTTGAGCAGA GACGTTGAAC CTACAACTCT CACCTGTGCA CCAGGATGTT TGCAGAGGCT GGGCAGCAAC ACCAGCCTGG 004480 004481 GTTTCACCAG GGCTTCTGCA TGAGCTTAGC TCATCAAGCT GCATTGCATT AAGCCTGTGA TCCTGGGATT AGCTCAGAGA 004560 004561 CACAGCTGTC CAAGGTGGAA GTTACAAGAC CAAGCGAACC CACGGCTTCT TTAAATAAAT ATACACATAG ACACAAATAT 004640 004641 GGAATTTAAA TAGTCTTAAG ACAGTGTTAA CAAGTAGTCC CCAGAGAGGG CTACCACGGC CTATGATGTC AGCCTTTCCC 004720 004721 ATTACCTCGT CTGTCTCTAT TTGGC |
Predicted Small Protein
Name | ENST00000585366.1_smProtein_3248:3511 |
Length | 88 |
Molecular weight | 10118.0091 |
Aromaticity | 0.0804597701149 |
Instability index | 57.9183908046 |
Isoelectric point | 11.4354858398 |
Runs | 15 |
Runs residual | 0.0341543513957 |
Runs probability | 0.0438202908791 |
Amino acid sequence | MVRSRLYKKKFLISQAWWHVPVVAATWEAEVGGSLEPRNSKLQSAIIVALQVALQPGRQR KTLTQNKMKRNKTKNFRLLKKFPIKCK |
Secondary structure | LLLLHHHHHHHHHHHLEEELLEELEEEEEELLLLLLLLLLHHHHHHHHHHHHHHLLLLLL LLHHHHHHHHLLLLLLLHHHHLLLLLL |
PRMN | - |
PiMo | - |