ENST00000586209.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000586209.1 |
Source |
Gencode19 |
Same with |
lnc-RPS6KB1-1:1,NONHSAT055049 |
Classification |
intergenic |
Length |
1603 nt |
Genomic location |
chr17+:58042457..58074333 |
Exon number |
4 |
Exons |
58042457..58042549,58043764..58043828,58070249..58070340,58072981..58074333 |
Genome context |
|
Sequence |
000001 GGTGACGTTT GGTCTGAGCT GACCTTTCCT CACAATCGTG AATTTGGGCT GTGAGGATCA GGCCTTGTCA GAACCCGAGA 000080
000081 TGAGAGGAGA GAGATTTCTG GTTCAGTAAG GGTGAGAGCC AGGCTCCAGA CTATAGTGAA TTTTCCGAGG AGATATGTAT 000160 000161 GACCTACAGT GACTCTGACG CTAAATCTGC AAGTTCTTTT AACACCACGG AAATAATGTC TAAATGCTCA AGACAAAATC 000240 000241 ACTTATGGTG TTGTCTACAT ACCTTATGAC ATCGTGTATG GCAAGGCACT TTAAGGTCAG AACTACAGAT GTCAAACTAG 000320 000321 TTCTCTTAAT TTCAGGGATC ACATGGTCAG GCATACACTG GTTCCAAAAA TCTTTACTAT AGATCCGAAA GCATTTTCCT 000400 000401 GAAGAAGTCC TGCCAGCTCG GCCACTTCGC TGTAATGCCT CGCTCCTACA AAAGGAAAAA AACCCAAAAA TTCCCCAAAA 000480 000481 TGTTCTGTGG GTTTCTCAGG TAATTTACTT TGTCTCCCCA AAACAGCTAG AAATTACCTA ATCAGTTGTT CTTTGAATAA 000560 000561 AAAGATTTGA CATAGAGACT TACTTTGAAA TTGGAACCAC CTCCAGGATG TCCAACCCTA ATCTGGGGTT GTGATTTAAC 000640 000641 TGCTTCACAA AGCCACCATC TACCACATAT CTAAGAAGAA TCAAAGCAAG TTAAGTTTCT GGAAAATAAA AGAAGACTTG 000720 000721 TTAATTGTTA ACCACTTTGG TTTCTCCTTT TCTAGCAAAC TAGCAGGTAC ACAATGCCTT TTATGTTAAG TGTAAAACTT 000800 000801 GAAAGTCAAG AAATTGGAAC CCTCGTATGT TGTTGGTGGG AATGTAAAAT GGTTCAGCCG AGGTGGAAAA TTGTTCGGAG 000880 000881 GTCCTCAAGA AGTTAAACAC AAAATTACCA TATGATCCAG CAATTCCATT TCTAAGTGTA CACCAAAAAG AACTGAGAAC 000960 000961 AAGTACTCAA ACAAATACTT ATAGACCAAT GTTCATATCA GCACTATGAA TCACAGCCAT AAGGTAAAAA CAACCTAAAT 001040 001041 GTCCATTAAC CATTAATGGA AGAAGGGATG AACAAATTGC TTTGCATATA TGTATGTAGT ATATATACAC ACGCATATAT 001120 001121 ACACACACAA TGGAATATAT ATATATATAC ACACACACAC TATGCAATAT TATTCAGCCA CAAAAAAGAA TGAAGTACTG 001200 001201 ATACATGCTA CAATGTGGAC GAACCTCAAA AATATTATGC TAAGTGAAAG AAAGCAAACA CAGAAGGCCA CATATTATAT 001280 001281 GATTCTATTT GTATGAAATA TCCAGAATAG AAAATACCTA CTGCTTCCTG CTGACACATC TAAAGAATTT TTTAAAAAAG 001360 001361 AAAATACGTA CAAACAAAAA GTAAGACTGG TAGTTGCCAA GGGCTGGGGT CGAGAGGGGA ATGTGGAGTA CCTGCTTAAT 001440 001441 GGGTATGGGG TTTTATTTTG AGGTGTTGAA ATATTTTAGA ACTAAGCAGA AGCAGTGGTT GCGCAATACT GTAAATGTAC 001520 001521 TAAGTACTAC TTAATTTTTC ATTTTAAATG ATTAATTTTA TGTGAATTTT GCCTCAATAC AAAAATACAC AAACTTGAAA 001600 001601 GTC |
Predicted Small Protein
Name | ENST00000586209.1_smProtein_1055:1192 |
Length | 46 |
Molecular weight | 5508.3325 |
Aromaticity | 0.177777777778 |
Instability index | 51.4155555556 |
Isoelectric point | 6.95159912109 |
Runs | 8 |
Runs residual | 0.0155303030303 |
Runs probability | 0.0639573396926 |
Amino acid sequence | MEEGMNKLLCIYVCSIYTHAYIHTQWNIYIYTHTHYAILFSHKKE |
Secondary structure | LLLLLLLEEEEEHHHHHHHHHHHHHHHHLHHHHLHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |