ENST00000586860.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000586860.1 |
Source |
Gencode19 |
Same with |
NONHSAT066649 |
Classification |
antisense |
Length |
2550 nt |
Genomic location |
chr19-:44501048..44506988 |
Exon number |
2 |
Exons |
44501048..44503384,44506776..44506988 |
Genome context |
|
Sequence |
000001 TTCACTCGTC CACCCGCCTG AGCCAACTTG CCCGCGACTC AGAGTGTGTC TGGACTCCGC TTCCTCCAAT GCCAAAGGAA 000080
000081 AATGTCTATA ATCTCACTCT TCAGCGGGAA GCGTTGGACT CCGCGGTGGT CCTTGACTAC ACACACCGCA GTGCCCACCG 000160 000161 GGAACGTATT CCATATCTCT GAGCGCCTGG TGGGGAATGT GGACTGTGAC CCTGACTGGA TGAAATGTAT CATCAGCATG 000240 000241 GATTCTGTGA TAAATTACAA GATACAAACT CAAAAGGAAC TGCTTTCTAT GTGCCTCATA TTTTAATGTT TCTCCCCTTT 000320 000321 GTGAATGCTT AGGTGAGACT GTAGTCATGA AAACTGAGTA AAGACTTTAT TACACACATT ACTGAGGCTT CTCTCCAATG 000400 000401 TGGACATTCT GAAGTTGAAG ACTTGAGGCC TGAATGAAGC ACATACCACC CTCCTCATAC TTCCGTAGTT TCTCTCCCGT 000480 000481 GTGGAGCTTC TGAAGCATAA TAAAATTCAA GTGATCCAGC AATTCTATTA CTGGGTATAT CCAAAGGAAA GGAAATTAGT 000560 000561 ATGTCACGGA GATATCTGCA CTCCCAGGTT CATTGTAGCA CTACTCACAA TAGTCAAGAT AAGGAATCCA CCTAAGTGTC 000640 000641 TATCAATACA TGAATGAAGA AAAGGTGGCA TATATACACA ATGGAATCCT CTTTAGACAT AACAAGGAAA CAAAATTTTA 000720 000721 TCATTTGTGG CAACATGGAT GAGTTTTCAA GGACATTGTT AATATAAGCC AAGCAAAGAA AGAGAAATAC TGACTGTCCT 000800 000801 CACTCATATG GAAGTTAAAA AAAGTTGATT TTGTAGTAGA GAGTAGAACA GTGGATGTAG ACAGGCAAGG AAGTGTAGGA 000880 000881 GGTAGGTGAG ATGGCCAAAG GTTGGCCAAC AGATACAAAA GAGGTAGAGG GGAAGAATAA GTTCTACTGT TCTGCAGCAC 000960 000961 TAAAGGTGAC TATCATCAAC AATTATTTAC AAATTGCTAA AAATGTGTTG TAGTCTCACA AATGCACCAC ACTGTAACAG 001040 001041 TCTCTCTGTA ACAGTCTCTC TTATCCCCCG GAGTTCTTAA TCTCACGTCC AATATGATTA AGAAGCACAG ACACAAGGGT 001120 001121 GAAATTGGAG TAAAAGTTTA ATAAGTGAAA GAAAAAAGCT CTCCACAGTG GAGATGGGGA TCCAAATAAG TTGCCCAGTA 001200 001201 TGAGGCTGGG GTCCGGGGTT TTTATGGACT GGGAAGGGGA AGGAATGCAC TTAGCCTGCG GGCTGTCTTG GAGAAAGCGT 001280 001281 GATTCAGCTT GGTCTGGGAC CTTGGCCCGG GACCAATCAG GAACCGAAGT GATGATTCAT AAGGGCTATT CAGCTTGGCC 001360 001361 CGGGACCAAT CAGGAGTTGA AGTGATTATT CCTAAGGGCT ATTCAGCTTG GCCTGGGACC AATCAGGAGC TGAAGTGATG 001440 001441 ATTTACAGAG GCTGGGCTTT TCCTTTTCCA CAAAAGAAAG TGCCAACCTG AACCTACTGA AGCCCACTGT GTTCATGCCC 001520 001521 ACAAAAGAAG AAACTTTTTC CTCGGAGCCT GCTGATTATA CAAAGGACAA AGGCATTTCT GTGTCTGGTC TTGTTCCCTT 001600 001601 AACTGAGTGA GCCGGAGGTT TGTGCGAGTT TTTACCTGAA TGGGCTGGAG GTTCTTCTAT CTGTGCAGCC ATGGGCATGT 001680 001681 CTCCAGGCAC AATCCCCTGT GCTAGTTCCC TTATCAGTGC CTGTAGCTTG ATTGTCTTCC CCAGGCTGCT TTTTGTGTTA 001760 001761 TGTGGGGATG AGACACTGAC CCGTTTGGCT GGGGGTCTCC AGGGACCCTT CCCTTGCTGT CTACCAACTC CTCTCAAATG 001840 001841 GATTTTGAAT TTTCCAACAC AAAGAAATGG TAAATGTTTG AGGTAACAGA TACACCAATT ACACTGATTG GATCACTATA 001920 001921 AATTGTATGC ACACATTAAA ATAGCACGTT GTACCCCATA AATATGAACA ATTATGTGTC ATTTAGAAAT AATGATAAAA 002000 002001 GTATATCCAG ATTCAAGCGC CTCTTGTAGC GTCTCCCACA ATCCTCACAT TTGGATGGGT TTTCCCCACT ATAGTCTCTC 002080 002081 GGCTGGTCTT TACGGTATGT CCTGTGTACA AGCCTCTTTC CACAGTCCTC ACATTTGAAT GGTTTTTTCT GGCAGTGGAG 002160 002161 TCTCTTATGA TTCAAAATAC TTGAGGCCCG GCTAAAGTTC TTCCCACATT CCTTACAATT ATAAGGTCTC TCTCCCGTGT 002240 002241 GGACCCTCTG GTGCAAGTCA AGATTAAACT TAGTAACATA GCCCTTCCCA CACTCCTCAC ATTTATATGG CTTTTCACCA 002320 002321 CTGTGGGATC TCTGATGGGA AGACAGTTGT GAATTTGTAT AAAATCCCTT TCCACATTCT TCACATTTGA AGCTTTTTTC 002400 002401 TCCACTGTGG ACTCGCTGAT GGTTCAAAAG GCATGAGGAC CATCTGAAGC TCTTCCCACA TTCTTTACAA TTATATGGTT 002480 002481 TTTCTCCTGT GTGGACCACC TGATGCTTAT AAAAATCTAG CCTACCAATA AAGCCTTTTC CACACTGCTC |
Predicted Small Protein
Name | ENST00000586860.1_smProtein_1670:1885 |
Length | 72 |
Molecular weight | 7623.1262 |
Aromaticity | 0.0704225352113 |
Instability index | 49.9492957746 |
Isoelectric point | 8.95428466797 |
Runs | 13 |
Runs residual | 0.0345441067457 |
Runs probability | 0.0402687755629 |
Amino acid sequence | MGMSPGTIPCASSLISACSLIVFPRLLFVLCGDETLTRLAGGLQGPFPCCLPTPLKWILN FPTQRNGKCLR |
Secondary structure | LLLLLLLLLLHHHHHHHLLLEELLLEEEEELLLHHHHHHHHLLLLLLLLLLLLLLEEEEL LLLLLLLEELL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiii |