ENST00000587933.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000587933.1 |
Source |
Gencode19 |
Same with |
NONHSAT059495 |
Classification |
intronic(S) |
Length |
1101 nt |
Genomic location |
chr18+:56038798..56039898 |
Exon number |
1 |
Exons |
56038798..56039898 |
Genome context |
|
Sequence |
000001 GCATGATGTC ACCTGCCTGT GATACCAACT GTATTTTGGG CACGGTTGGG TAGATGAGCT GTGTCCTCGG CCCTGACCAG 000080
000081 CGCTGACTCA GTGTTTCTGT TGCTCCTCAT TGTATGAAAG GAGAGGAAGA GGCCAGCAGT GCCCTTGAAC CCACTGCTGG 000160 000161 TTTGCCAGTC ATGGTGGGTT GGGATGCACA CCTGTGATTC CGGTCTCCAC TTTGACCCTG TGTTTGTGCT TTCTGCTTTC 000240 000241 ATCACTGTAT GATGAAGCAG CTAGGAGCAC AGGAATTTCT CTTAACGTCT AACTTTATAC CACATGCTGA CAGTTAGTGC 000320 000321 CTAAAGTACA GTGCGTGTAT TATTTTTACC CTCTTCACAG CCCGTCGTGT CCCCAGCAGG AGAGACCGTG GAGGGACCAG 000400 000401 GGACAGGCGC TTAGGCCTGT GACTGATCCT CTGGATTCTG AAACCAGAGC AGCCACCCTT TTTGCTGACA TTAACCTGGA 000480 000481 GAGTGATCAA AGCACAAGAA AGGGGATAAC TTAAAACTAT TGGTATTTAC TTAGTTGGAA CATTATTTTA CTTATTTATT 000560 000561 TTTTTGGCGA TAGAATCTTA TTCTGTTTGC CAGGCTGGAG TACAGTGGCA CAACCATAGT TCACTGCAGC CTCTATCCCC 000640 000641 TGGCACAAGT GATCCTCCTG TCTCAGCCTC CCAAGTAGCT AGGACCACAG GCACACACCA CCATGCCTAG CTAATTTCTT 000720 000721 TTTTTTTTTT TGTAGTCATG GCGTCTTGCT ATGCTGCTTA GGCTGGTCTT GAACAGCCTC AAGCCCTCCT CCTGCCTCAG 000800 000801 CCTCCCAAAG CCGAGGATTA CAGGATTATA GGCATGAGCC AGCAAGCCCA GTCTAGAACA TTCTTTATCC TTCCTGTTTT 000880 000881 CCTCAGATAC TTTCACTCTT TTTTTAAACT TTATTTATTT TTTATAGAGA CAGGGTCTCA CTATGTTGCC CAGGCTGGTC 000960 000961 TCTAACTCCT GGGCTCAAGT GATCCTCCCA CCTTGGCCTC CCAAAGTGCT GGAATTACAG CGATGATATT TTCACTCTAA 001040 001041 AAAGATAGAA AGTATATTGA CCAGCCTGGC CAACATGGCG AAACCCCGTC TCTACTAAAA A |
Predicted Small Protein
Name | ENST00000587933.1_smProtein_833:964 |
Length | 44 |
Molecular weight | 5137.9081 |
Aromaticity | 0.255813953488 |
Instability index | 75.6674418605 |
Isoelectric point | 9.52117919922 |
Runs | 8 |
Runs residual | 0.0287431408414 |
Runs probability | 0.00660219042571 |
Amino acid sequence | MSQQAQSRTFFILPVFLRYFHSFFKLYLFFIETGSHYVAQAGL |
Secondary structure | LLHHHLLLEEEEHHHHHHHHHHHHHHHHHHHHLLLHHHHLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooo |