ENST00000588453.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000588453.1 |
Source |
Gencode19 |
Same with |
NONHSAT066216 |
Classification |
intergenic |
Length |
1701 nt |
Genomic location |
chr19+:38888821..38890521 |
Exon number |
1 |
Exons |
38888821..38890521 |
Genome context |
|
Sequence |
000001 TCCCACCTTT TATGTTCTCC CCCTCCATTA ACCCCTTCTC TTCCTATTTA TTTATTTATT TATTTATTTA TTTTGAGACA 000080
000081 GAGTCTCGCT GTATCACCCA GGCTGGAGTG CAGTGGCACA ATCTCGGCTC ACCACAACCT CCCCCTCCCG GGTTCAAGCC 000160 000161 ATTCGTCTGC CTCAGCCTCC CGAGTAGCTG GGATAACAGG CATGTGCCAC CACACCCAGC TAATTTTTTG TATTTTGAGT 000240 000241 AGAGACAGGG TTTCACCATG TTGGCCAGGA TGGTCTCAAA CTCCTGACCT CATGATCCAC CTGCCTCAGC CTCCCAAAGT 000320 000321 GCTGGGATTA CAGGCATGAG CCACTGCACC TGGCTCTCTT CCACTTTAGA GTGAGAAGTT GCTTCAGGAA GTTTGAAAGC 000400 000401 CTGTTTCATG GCCCACTGAG TCTCTTCTGT GCAAAGGGGG GTGCCACAGG CTTTTTTCCC CCAAGTGAAA TGGGGCTTCC 000480 000481 AGTGGATCGA AGATCTGGTG TCCTGTATGG GGGCCTCAAG GTCTTGGAGC AAGACAGTCT CAATGTTGTA TGGGCTTGGG 000560 000561 ACCTGCATCT GGCCCCAAGC ATCTGGAACT GTGCACTTAA CCTTTCTTCA TTACCCAGAC TTGGATGGCC TTGTTGGGGT 000640 000641 TCAAGGGATA GGTCCTCTGT CTCTTCCTTT AAATTATTAA CTATTTATTA CATCCGGAAC CTGTGAGATT CAGCACTCCC 000720 000721 AACCAGACCC TGGGATGGGT GAGAGAAAAG CGGGGGTGTC TCTCCCCTCC CCACTCTGCC CAGCTCTCAT CACTGTCAGA 000800 000801 CCCACCAGAG CTGAGGGCGG AGGGATTGGG GGCTGGGGCA GCCTGGGTCC CCATGCCCCT CTCTGTGCCT CGGTCTCCCC 000880 000881 CCTTCCATGG TGGGCGGGGG GGAAGCTCCA TTCTTAACCT ACCTCGTTTT GGGGAGGGGT GGGACGGGGG ACCAGAGTGC 000960 000961 TGTACGGTGC TGTGGGATCT GCAGATGAAG CGGTGGGGGC TAAGGAAAGG TCCCCTGGCC GCCACTTCCC AGCAGCGCCT 001040 001041 CTCCCAGGTC CCCCAGTCCT GCTCCCTGCT GAGACCCACC TCTGATCCAT GATTCCCCTT CATTGCCCCC AAATCAGGGG 001120 001121 TACATGGAGG GCCGCCCTGG GAGCCAGGCA GACCTCAGAC CCTGGAGCCC CCAGGCCCAA TTTCCCAGCC GCTTGCCCCT 001200 001201 CAGATCGGAT GCTTGGCCCC CAGATTTGGG GGAGGCACCC CAACATATAT CTTCCTGATC TTGTTTCTAA GCCAGTCTGT 001280 001281 GACCTCAATA TTGTTAGTGT CAGTGCAGGC TGAAGTGGTG GGGGAGGATG GGGGCCAAAG ACCCAGCCTT GTCATCGGGG 001360 001361 GAGGGGGCAC GAGATCTGCT CCAAGAAATG TCTGTGACAA AGTCTCAGCC TGTGTTATTT ATTTGCCTCT GTGCACCCCA 001440 001441 CCCACTCACC TTCCTGAACT GCTAAACCAG TCTCCTACTT AAATTCTCCC TTCTCCCATC AGACCCTCAA GCTGAGTTTT 001520 001521 ATAAGACACT CAACAAATGC ATTTATTGAG CACCTAATTA TGTGCCAAGC CCTGTTGAAA GCACTGGAGA TAAAGCAGTG 001600 001601 GGCAGAACAG ACAAAAGTCC CTCCTGCAAA GAGCTTATGA GCTTTATAGT AGGGGAGACA ATAAGTAAAT GACTTAATAT 001680 001681 GTTAGAAATG ATAGAAAGCA G |
Predicted Small Protein
Name | ENST00000588453.1_smProtein_11:241 |
Length | 77 |
Molecular weight | 8793.9275 |
Aromaticity | 0.197368421053 |
Instability index | 71.65 |
Isoelectric point | 6.23858642578 |
Runs | 12 |
Runs residual | 0.0164851784634 |
Runs probability | 0.0342548430784 |
Amino acid sequence | MFSPSINPFSSYLFIYLFIYFETESRCITQAGVQWHNLGSPQPPPPGFKPFVCLSLPSSW DNRHVPPHPANFLYFE |
Secondary structure | LLLLLLLLLLHHHEEEEEEEEELLLEEEEELLEEEELLLLLLLLLLLLLLEEEELLLLLL LLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |