ENST00000590024.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000590024.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intronic(AS) |
Length |
3590 nt |
Genomic location |
chr2+:179588184..179591773 |
Exon number |
1 |
Exons |
179588184..179591773 |
Genome context |
|
Sequence |
000001 CGTTGTTAGA AACCACACAG GTGTATTCCC CACTCTGAGA TATGTCAATA TTAAATAATT CCAGTTCTGC CACAGTGTCT 000080
000081 TCAAAATAGA TGTTGCACCG GTCTCCTTTC ACTAGTTCTC TGGCACCTCT GAACCAGTTG ACTTTGAATG GAGGGGTTCC 000160 000161 TCTAATAACG CTTGTGAAGG TTACATTTTT GCCTGGTAGT ACTTCCAAAG GTTCAGGTTC TTTCACAAAA GAGGGTGGTT 000240 000241 CTATATAGAC ATGGAGAACA ATTAAAAGAT CCTGTAAGCT TCAGATGGAG TTGCAATTTT GAATAAAACA TTAGAGCACT 000320 000321 TTCAAATGTT TGTCAACATA GATGTGCACC TGAAGAGGAA TTTGTAAGAA ATTCCTTACA AGTTTGACTG TCTACTGACC 000400 000401 TTGTACAGTT AGCACTGCAC GACATTCATC AGACCCAGCG ACATTAGCAG CCACGCATGT GTAATTGCCC ATATCTGAGG 000480 000481 AATCCAGAGA ATTCAACTGC AATGTGCAGA CATTATCTGA AAATGTGGTT TGGTACTTTG CTCCACTGAC AATCTTGGTT 000560 000561 TTCTCATGAA ACCAGGCAAC TGAAATAGGT GATGATCCAG CTACTTTGCA TTCCAAGATG CAAGAAGCAC CTAACACCCC 000640 000641 ACCAGTATTT TTCAGTCTTC GTGTGAAAGA GGGAGGAACT GCTCGGTCTG TGTGAGGAAA GGTAAGAGAC TCATCATGAT 000720 000721 TTGAAAGAAT AGAAGAGACT TGAAAGAAGG AAACTTGTAA AAGGAATTTG CATAAGCAAC CAGAAGAAAA CAGCAGAACT 000800 000801 AACCTGAAAC ATCAACCACA GCTGTGCAGC TGCTTTTCCC AACATTATTT TGAACCTGGA AAGTGTATGT GCCTGCATCT 000880 000881 TGCCTTTCAA CTGAGAGAAT CCTTAAGGAA GAGATTTTGT TGTAGAAGCT AAATTTGTGT TTTTGGCTGC TGGTCAACAG 000960 000961 CTTTCCATCC TTGTACCATT CAACAGAGAG TTCCGGAGTG CCAGCCACCT TACACTCCAG AGTGCACGTT TCTCCTACAG 001040 001041 TCACCGTCAT CGGTCCTGCC TTCTCAACAA TGACTGCGGG CTCTGAAATA AAACGTGATA TCCATCTGTC AAAGTCTGGG 001120 001121 ATCTTTACTC TGTCTCTACT ATCACATTCA CTAAGATTGT TTCTCCCAGT GAGATGGTTA TGTTAGGGTG CTCTCTCTCT 001200 001201 CGACTTTAAA GTGTGATTCC ATAATTACAT GCAGTCATAG AATTATAGCT ATTTTTTATT TTAATATTTT TTCTTTTCAG 001280 001281 TTTTTTCTTT ATTTTTTGTT TTTCCCACCA CTCTTGCTGT CGTCTTATGT AGCAATTATT CTTAAGAAAT ATATGTTCGT 001360 001361 GCATGACTCA ACTTCAAAAC AATTTAAACA ATGTGCATTA GATAGTATAT ATTGATTTCC ACTTGACCCT CTGTAGATCA 001440 001441 AAGTCTACAG GTTATTGTGA ATTACTTGGT ATTTTTGCTC TACCTTAAGG TGCTAAAGAC AATTCTTTGA AAGTTGTTAT 001520 001521 TCAAACAATT GTTTAATTGT CATTAATTTT ATGTGGAAGC TTTGCTATCA AATGCCAACC TTTGGAGTTC TTGTTAGTTT 001600 001601 TAACAATTAC TCTTGTAGCA CATGCTGGGC TCTGTATTCT TTCATGCTTA ATCAAAGAGA GTCATGATTG TATCTGCTAA 001680 001681 TTGATATAGA CAGGTAGTTA TTAAACAATA AAACAGATGT CTAATTTTTG TTAGAATCAC AGAAACAGAA AAGAGTGTTT 001760 001761 GAAAGATCAA CTATGTCTTT CCTCTAGACC TTTCAAATAG ATGAGGATAA ATATAGTTCT AGAAGAAACT CAGAAAAAGA 001840 001841 ATCTGCCAGT AACTCTTAGT AATTCATTCC AGCATTTGGC ACCAGTTTCT ATCGTGGGCT ATTGTACCAA CCTAAGACCA 001920 001921 TCAGTGTGGC CATGTTCTCC CTCATTCCAC CATCATTCTT GATTTGGCAG ATATACTTTC CAGCATTAGC TGGCTCTGCT 002000 002001 TTTGCAAACT GTAGAGTTGC AACATTTTCC ACAAATGTAA TCCTGATGTT TTCACTTTCT CTAATCACTT CTTCCTTCTC 002080 002081 TTTAAGCCAC TGGACAAAAA TAGGCTGGGC GCCTTCTATG GATGCTTGTA ATTCAGCAGG CTCTCCGGCT ACAACAGTGA 002160 002161 GGCTGTTCAG TTTGGAGACA AATCTTGGTG GTTCTGAACA GGAAAAGATG GATGGAAATT GTTGAAAAGA TTGTCCAGAT 002240 002241 CATGCGAGAG TGAAAAAAGT AGGATTTTGC ACATTTATGA CATTTCTGCC ATGTGGATGA ACTATATTTA CCTTTCAATT 002320 002321 TTACAGTACA AACACAAGTA TCACTTCCCA CTTCATTCTG TGCTTTGCAG TGGTATTCAC CGATGTCTGA AGTGTCCACA 002400 002401 TTGAGAATGT GAATACTTGT GTGGAAGTTT TTGGATGCAA TCTTGTATTT CTTGCTGCTT CTGAGTTGCC GCTTGTCTTT 002480 002481 GTACCATACC ACCTCAAACG GTGGTGTTCC CGAAAGTTCA CATTCAAGAC TGACTTCAGC ATTTTTAAGG GTTTCTACTA 002560 002561 TAGGAGGGAA GCTGCTAAAA ACAGGTGGCT CTGCAAAAAA CAAGAATTTC TCATGAATTG GGCTACTGAA TTTCACAAAA 002640 002641 TGAAAATTTT TTATTTGTCT TTAAATTGGA AGAAAGGTTT AAGATATTCT AATGGGTAAG TAGAGTCCAG CACTAACACT 002720 002721 CTCATGGGAT AACAGCCTCA GAAGCCATTT GCCTTCACAA GATAACCAGC TAGATGGGCA GAGAACCCAG ATAGATCCTA 002800 002801 GATGTCGTTA CTGAACAGTT CAACATTCTA TCTACTACAC CTTACTGATG TATCTTAGGC TACAAAGATT GATACAAAAA 002880 002881 TTGCAAACAA GCAAGTATAG CAATAAATAA TGATTTGCAT GAAGTATGGA ATTCTAATTT CAAGGATGAT TTTTTTTGTA 002960 002961 TATGTTCTAT AACAGACACT TGGAAGTCAT CACAACATCC GTGATCTAAG TCTTCCATTT CAGCAAATGA TTACTGCAAT 003040 003041 AATTGTCTTA AAACAAGACA AACTTGGCCT TTGTGACAAA AAAAAAAAGC ACTGGAAAAT TGCAGCAAAA AAACACAGAT 003120 003121 ACTATTTGTA CCAAGGTATA GTCATATAAT TTTTAAAGGA TAGGAAGTGA TCCTTGAGAG AGAAGGAAAA AATATTATTG 003200 003201 TCCTGTTTTA AACATAAGTT TAAAACCTGT ATTGCTTTCA CTTTGCATAG ATATAGTAAA AGTGCTTGTT ATTAATGATA 003280 003281 TAGATTATAG TGAGAATGAT ATATCTGTAA GTTGATTGAA AGCAAAAGAC TAATTTTAAA ATGCCTACTT CATTTTTTTG 003360 003361 TGCAGTTTTG AAACATCACG TTTGATGTTT GGCAAATGTG TTGAGGTAAT CAGAATTATG ACACTGGAAT AACAAAAATA 003440 003441 TTTCATAATG ACTAGTTACA TGTAAGCAAA ATTCAAGAAG GAAACCATCT AAAAAGGGAA ATAATACTAG CTCAGAAAAA 003520 003521 TATTCTATGA TCTCAAATGG AAACTAAAAT GATAGTAAAT GAATAAAGAG CTATAATACC CAGGGGAGAA |
Predicted Small Protein
Name | ENST00000590024.1_smProtein_1931:2224 |
Length | 98 |
Molecular weight | 10490.9511 |
Aromaticity | 0.123711340206 |
Instability index | 40.824742268 |
Isoelectric point | 5.53765869141 |
Runs | 17 |
Runs residual | 0.0437189767087 |
Runs probability | 0.0477519041534 |
Amino acid sequence | MFSLIPPSFLIWQIYFPALAGSAFANCRVATFSTNVILMFSLSLITSSFSLSHWTKIGWA PSMDACNSAGSPATTVRLFSLETNLGGSEQEKMDGNC |
Secondary structure | LEEELLLLLEEEEEHHHHHHHLHHHLLEEEEELLLLEEEHHHHHHHHLLLHHHHHLLLLL LLLLLLLLLLLLLEEEEEEEEEELLLLLLLLLLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTTToooooooooooo ooooooooooooooooooooooooooooooooooooo |