ENST00000593139.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000593139.1 |
Source |
Gencode19 |
Same with |
NONHSAT053749 |
Classification |
antisense |
Length |
542 nt |
Genomic location |
chr17+:40831981..40834038 |
Exon number |
3 |
Exons |
40831981..40832419,40833382..40833456,40834011..40834038 |
Genome context |
|
Sequence |
000001 AGCAGGCTAC CATGACGCCC AGCGGCAGCG CGAAGCCCAG GGCCACCTGC GCCACGGCGC TCGCCCCCTT CACCGTCTGC 000080
000081 GTGAGGCCCT CGGGGAAGAT GAGGCGACAG CGTCGTTGGC CTTCCCGCTG CCCATCCTGG CTGAAGAGCA GCGCAGGCAG 000160 000161 CGCCAGGAGC AGTGACAGCA GCCACACGAT GACGGAGACC AAGTGTGCGC GGCCGGGAGT GGAGGGCCGC GGCCCGGCTG 000240 000241 GGAGCGCTCG CGCGATGGCC ACGTAGCGGT CGGCGCTGAT ACAGGCCAGG AAGAGGAAGC CGGCGTGGAA GGAGGCCGAG 000320 000321 TAGAGGCCAG AGATGGTGCG GCAGGTGGCA CTTCCCAGAC TCCAGCCCTG AAGAGCCCCT GCTGCCGCGA AGGGCAGAGT 000400 000401 CAGGGCCAGC AAGAGGTCGG CCAGGGCCAG CTGGAGCAGC GCCCTCTCCT GGAAGGATGC CCATATGCAG GCTTTGCCTC 000480 000481 AGACCTGAGC CCTGGACTCC AACCTCCGTC TGGAGATCTG GATTTTACGA AAAAAAAAAA AA |
Predicted Small Protein
Name | ENST00000593139.1_smProtein_11:265 |
Length | 85 |
Molecular weight | 8838.0401 |
Aromaticity | 0.0357142857143 |
Instability index | 73.1607142857 |
Isoelectric point | 11.5955200195 |
Runs | 9 |
Runs residual | 0.0268425841674 |
Runs probability | 0.0477438222538 |
Amino acid sequence | MTPSGSAKPRATCATALAPFTVCVRPSGKMRRQRRWPSRCPSWLKSSAGSARSSDSSHTM TETKCARPGVEGRGPAGSARAMAT |
Secondary structure | LLLLLLLLLLHHHHHLLLLLEEEELLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |