ENST00000597787.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000597787.1 |
Source |
Gencode19 |
Same with |
NONHSAT106906 |
Classification |
intergenic |
Length |
2469 nt |
Genomic location |
chr6+:2988933..2991401 |
Exon number |
1 |
Exons |
2988933..2991401 |
Genome context |
|
Sequence |
000001 AAAGCGACAG GGTGAGTCGC AGGGCACAGT GTGGGATGAG TCACCGACAG CAAGGCATGG ACTCCGGGAA GAAGGGGAGA 000080
000081 CGAGCCGGGA AAGACTTGCA TCGGGGATGT GAGCTGAGCT GCACCCAGAC AAAAGCGGCT CGGGGCTCCT GAAAGCAGCA 000160 000161 GGCACCGCCG GTCCTGCCAA GGGGCTACTT CCTGCGCGGA GTAGGAGAGT AGGAGACCCC AGGCCAGTCC CAATCCCCGG 000240 000241 CCCGTCCGGG ATGAGGGGGG CTGCGGGAGC TGCGGGGGCC TCCTCCAGGG AGGACGGTTG CAGGGTCCCT CGGCCGCCGC 000320 000321 CCACTCCCGG GGGCGTTCCT TCCTCCCAGC TGCGCCCGGA GCGCCTGCTG CCTGGCGAGA GCCCGCCCCT CTGCAACCAG 000400 000401 CCCGCTGCAG CGGAGGGCGC CTGGGTGCCC TCGGCCGAGC CAGCAGCCCA CGGTCGGCGC CGCACTGTCC CCTGGTGGCG 000480 000481 GAGCGCTCCC GCGACCCGGC TCGCCACGCC TGGGAGGGGT CCAGGAGGAC GCGGCTGGGA CCTGGGGGCT CTCAGGGTGG 000560 000561 GGCCTTGGGG GATGAGGCTG GGGCCCGCGG GAAACCGGGC TGGGGCGAGG AGGCTCGCAG GACTTCCTGC CACAGAATGT 000640 000641 TTCGATGCTT TTTTTAATTC TGCAAATGTA AGCCTTTCCA CTTTAAGTCC AAGCTCAGCG CAGAGGACTG TTCTATAATA 000720 000721 CATACAATTT AGTTTAAAAA TGTTGCAAAT GTTAACATGT GTCACAAACT CAAGCAATCC AGTATTATAG AAAGCAAAGA 000800 000801 ATGAAATGTG CTGCTTCTTT CTCCCCCAGA CGCCCTTGCA TACATTAAGA TATGTATATA TGGAAATGTT ACCGGGAGTC 000880 000881 CCGGTTATCC CAAAAAGGGT TGTTTCCTGT TGCGTGGTGA GGCCAATGCA CGAAACCGAA AGGGAGTGTG TCAAGCAGTG 000960 000961 CAGGCTGTAT TCAATGGCTA TGGAATTGGA AGATCTGAAA TCAACTTAGC TTGTGAGAGC TGGGAAGTTT CAGAGGTAGG 001040 001041 GTGTCTTTAA TGAAGGGGCT GGGCATTAAG AGCACGGGGG GGAATATTCG TGCTTTCCTT GGGAAAGAAC GGAGATTTTT 001120 001121 CCCGGAATCA AGAAACCCCT TTTTTTCTGT CCCTTCTTGG TCTCTTCCAG TCGTTGTCAT GGCGACATGT TGTTTAGCAT 001200 001201 GAGAACAGGA TGATGATAAA GCCAGAGGCT CTTCAGAGGC GCCATCTTGG ATTTCGCCAG CTTCAGCTGG TTTCGTCCTA 001280 001281 AGAAGGAACT TCGAAACACA GGCATTCTTT TTCCTGAAAA TAAGCAGAGT TACAGCTGAG TAGGAATTTA GCTCTGTCCC 001360 001361 ATATGCTATC GCATTGGGCA GCAAAAGCAG GGTGGGGTCC AGCGAAATCA GCAGGCACTG CAATGAGTAA CATACCCAGC 001440 001441 CACGTTTATG CAGCATTTTT ACGAAAATGA AACCATACTA CCTGTAAAGG AAGATATGCT AACAAACAAC AAAACTGGCA 001520 001521 GGAACCAAGA TTCCTACTGA CACTACCCTT AGTTTTAATT TTCCCTGACA ACAAATGAGG TTAACAGAGC ATAATTATCT 001600 001601 ACCGTGACCC CTTCAAAAAG ACAGGCTGTA TACATTTGCA CTAAGAGAAG AAATCGTGTA ATGTCAGCAA ATTTCCCCCA 001680 001681 CTTAAAGCTT CTCTATTTAA AAAGCTTCAC GCACACATGC ACGCATATGT CTTCAAGATG ACCACAATTT ATTTTGCAGT 001760 001761 CATTCTTTGC ACCAGTTCCC AATTTTTCCC ACTAGCTTGC AAGCTCCGTG ACTCGAGGAG ACCGGGGGAT CAGAGTTTGT 001840 001841 TTTTGCGGAG AAGTGAGTCC TTTATGCCCC AAATAGTGAC TGACATAGAG AAGGTACTCA GTAAACACTT TTTAAAGGAA 001920 001921 TGCCTGCCTG ACTGAAGCTT AATGATGTGA GGCTTCTAGT GGGATACCCT ACCTTGTTTT AACCTGAAGT GACTCTTCCT 002000 002001 TAGCTAAGAG AGCCAGACGG ACTCCATCGT GACTCCTTCA CTCGCAGCCC CTTACCCACC CCCTTCCTCA AGGACTTAAC 002080 002081 TTGTGCAAGC TGACTCCCAG CACATCAAGA ATGCAATTAA CTGATAAGAT ACTGTGGCAA GCTATATCCG CAGTTCCCAG 002160 002161 GAATTCGCCC GGTTAATAGC ACCCAGAGCC CCTGCGTTTG TGTCCGGTTG ATAACGCCCA AAGCCCGGCG TCCATCACCT 002240 002241 TAGGATAGAC TTAAAGCCTC TGCACCTGGA ACTGTTTACT TTCCTGTAAC CGTTTATCCT TTTAACTTTT TGCCTACTTT 002320 002321 ACTTCTGTAA GATTGTTTCA ACTAGACTCC CCCTCTCCCC TGTCTAAACC AAAGTATAAA AGAAAATCTA GCTCCTTCTT 002400 002401 CGGGGCCAAG AGAATTTCGA GCGCTAGCTG TCTCTCGGCT GCCGGCTAAT AAAGGACTCC TGAATTCGT |
Predicted Small Protein
Name | ENST00000597787.1_smProtein_1049:1201 |
Length | 51 |
Molecular weight | 5504.4798 |
Aromaticity | 0.12 |
Instability index | 64.828 |
Isoelectric point | 10.3101196289 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0464287817229 |
Amino acid sequence | MKGLGIKSTGGNIRAFLGKERRFFPESRNPFFSVPSWSLPVVVMATCCLA |
Secondary structure | LLLLEEELLLLHHHHHLLLLLLLLLLLLLLEEEELLLLLLEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i????????????????????????????????????????????????? |