ENST00000598560.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000598560.1

Source

Gencode19

Same with

NONHSAT072634

Classification

intergenic

Length

784 nt

Genomic location

chr2-:98081774..98091784

Exon number

4

Exons

98081774..98082014,98088548..98088677,98088770..98088854,98091457..98091784

Genome context

Sequence
000001 AACATGCTCC TGAATGACTT TTTAATAAAT AATGAAATTA AGGCAGAAAT CAAGAAGCTC TTTGAAAATA ATGAGAACAA 000080
000081 AGTTACAACA TACTAGAGCC TCTGGACACA GCTAAGACAA TGTTAGGAGG GAAATTTATA GCACTAAATC CCACATCAAA 000160
000161 AAGTTAGGAA GAACTCAAAT TAATAACCTA ACATCACAAC TGAAAGAACT AGAGAAGCAA GACAAAACCC CAAAGCTAGA 000240
000241 GGAAGACAAG AAATAACTGA AAATCTGAGC TGAACTGAAA GAAACCGAGA CATGAAAAAA AGAAATTCAA AAGATCTATG 000320
000321 AATTCCGGAC ACTACCCAAA GCAGTGCTTC ACTACAGTGG CAGACAGACC TGAAAATTTT CATCTGAAGC AGCAGAGTGA 000400
000401 ACTGCAGAGG CAGGTCACCA ACCAGTGTGG AGGCTAAAAG CGGGCCTCTT TGGGGATTCC AGGTGGAAGT GTTGGACATC 000480
000481 TGTAGTATTC CTGGTCTCGA ATCATCCTGA TATTCTTCAT TTTGTTATTC ACATTGGACT AGGAGATAGA ATCTCACTAT 000560
000561 GTTGACCAGG CTGGTCTTGA ACTCTTGGCA CCCAAGCGAT CCTTTTGCCT GGAATCCCAA AGTGTCAGAT TTACTGAAGA 000640
000641 ATATTTCATT GTAATTACTT TTTATACTTT ATAGGTCAAG AGCTCTGTTT TAAATACAAA ATTTATTGAA TATACTTTTT 000720
000721 CAAACAAAGT TTCATGTTCT AATCATTGTC TGATTTCAGC ATTAAATGAA ACACAGTAAA GAAA
[back to top]

Predicted Small Protein

Name ENST00000598560.1_smProtein_317:436
Length 40
Molecular weight 4478.9166
Aromaticity 0.0769230769231
Instability index 59.3923076923
Isoelectric point 7.84686279297
Runs 6
Runs residual 0.0148944193062
Runs probability 0.0373461696991
Amino acid sequence MNSGHYPKQCFTTVADRPENFHLKQQSELQRQVTNQCGG
Secondary structure LLLLLLLLLLEEEELLLLLLEEHHHHHHHHHHHHHLLLL
PRMN -
PiMo -