ENST00000602461.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000602461.1

Source

Gencode19

Same with

NONHSAT136802

Classification

intergenic

Length

1379 nt

Genomic location

chrX-:45604639..45629677

Exon number

2

Exons

45604639..45605528,45629189..45629677

Genome context

Sequence
000001 TCCGGCCACT CTCCTGCCTG GGCTGCTGCT CAACGGGGGC TGGGGGTGTG TGGGGCGGGG GTGGTCTGTC CAGTGATTCA 000080
000081 GCCACATGTG ATAGATGACC AAGTGACTGC TTTCTTGGAG TCCGCACACC AGTGGAAGAC TCTCAAAGTG GTTGTGACCG 000160
000161 ACTTGATCAA ACTCTAGGCT TCCTGAACTG GTAACTGTCA CTTTAATATA GGTTACTGAT TAAACTCAGA AAAATGCAGC 000240
000241 TTAAAATCTT TGCCAGGAAC TTGTGTGGAC TTATTCCCTG TTCCCCCCCC CACCCCCCTT GTTCTGATTT GTTTTGTCAC 000320
000321 AGGAATGAAA TGCAGATAAC TCTTTAGAAA ACTTTTGTAG GAAAAGCGCC TCGTGTGATC TGGAACAAAG ACGTTTTATA 000400
000401 ATCAGATTTA TCAAGCTGCG AAGAGGGAGT TTTAGTGAAC GGAAGCAGCA GCATTCTGTC ACCAGGAAAT ACTCCTTTAT 000480
000481 CCAGAATTGG AGGTATAAAC CAGTGGAGTT TATCATTGAA TAGAGTGCAG AGAAAGGACC GCAAGAAAGC TGATCACCTC 000560
000561 AGCAATGAAT GATTTCAATA CGATTTCACC CAAATGGTCT CACACACCAG CCTAGTAAAC CAGAGATAAG GTGTAATGTC 000640
000641 ATCCTTCCTT CCTTCTCCCT GCCTCAACTG TCAAAGATTG ACAACTTACA TGTTGTTTAC TTTTTGGCTT CTATTTCTGT 000720
000721 TCATAATTAT TATCAGAAGG CATAGCACCC ACAAGCCTAA TCATACTGCC TTACAACCTT ATTCCTCTTC ATTTTGTCTT 000800
000801 CTCACTTACC TGCAGAAACC CAGTTTATTT TTGTTCTCCC TTTACCACAC CAGCCTTGTA ACTGTTATGA ATGACCCTCA 000880
000881 ATCTCACTGG AATCTGAATC ACTCAGGAAT TCAAGCAAAC TGGATGTTTT AACCACTGTT CAGCTTTCTT ATGGAATGAC 000960
000961 AGAGAACTTG TAAAGATAAA ACACCAGTTT GCAGGAAGAA AGGAAGAGAA TGGAAATTGC TTCTGGAAAA TACTAGTTTT 001040
001041 ACAATATGTT TTGTTTGTCT GCTCTCTTAA ATAAACTTAA TCCTATAAAC ATTTTTTAAG AACTAGCCAT TAAGACTGTT 001120
001121 AAGTTCTCAA TTATAAAGGA ATAAAATGTT TTAAGGAGGA TTTATTTGCC CTTGCTTATA TGAACTGCAT ATTTTTAGTA 001200
001201 GGAAATCATG TAATTTAAAT TAGTATTGAT TAACAGATTT AATGTAGAAA ATGGACATAT AAAGAATACA AGGATAAATG 001280
001281 TCTACATGTA ATAATGGATG GTAGTGATAT AATGCATTTT TGTCATCCCA TGCTGAATTC AGTAAAAATA AAGCTAATGA 001360
001361 CTTGGAGCTT TTAAAAGAT
[back to top]

Predicted Small Protein

Name ENST00000602461.1_smProtein_635:931
Length 99
Molecular weight 11586.4299
Aromaticity 0.163265306122
Instability index 63.8234693878
Isoelectric point 9.30157470703
Runs 12
Runs residual 0.0165935533092
Runs probability 0.0351086380499
Amino acid sequence MSSFLPSPCLNCQRLTTYMLFTFWLLFLFIIIIRRHSTHKPNHTALQPYSSSFCLLTYLQ
KPSLFLFSLYHTSLVTVMNDPQSHWNLNHSGIQANWMF
Secondary structure LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHL
LLLLEEEEHHHLEEEEEELLLLLLLLLLLLLLLLLEEL
PRMN LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTTTTTT
TTTTTTTTTTTTTooooooooooooooooooooooooo