ENST00000607486.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000607486.1

Source

Gencode19

Same with

,

Classification

antisense

Length

925 nt

Genomic location

chr5-:86672073..86672997

Exon number

1

Exons

86672073..86672997

Genome context

Sequence
000001 ATTTTTAAGG AGGGAAAACA GAATAACTTA TTTTGCAATA TAATTTAACA ATTTAGTATA TTCAGAGATA GAGTCCATAT 000080
000081 ATCCTTGATA TAAAATCTAA ACCCAGTTTC TTGTATCACA CTAACATGGC CATACCATAC CTTCCATGCT TATTTCTCTG 000160
000161 TCATTTAGTG TGCATAACAA CAACGATTCA AGCTTTTCGT GAAGAAAAAT CCTCAGTAGG ATGCTGGCCA GTAGTGTTCG 000240
000241 GTCTTGTCCA CATACATGTG ATAAAGCATA GACTACATGA AGTTCCTTTT GCAGTATAAG CTAAAATGAC ATTTTAAAAG 000320
000321 ATTGTTTAAA GTACGTAGCA TTATAAGCAT GCTCCATGAG ACTAACAAGA AATATGTTCT TTCACAAGTT CTTATATTTA 000400
000401 AAATGATGTC CCATTGAATA AATTTATTTA AAATAGAATG AATTCGTAGT CTACTTATTT CTACCAAAAT TACAGTATAA 000480
000481 AACAAGGTTT AAAATCTCTG GCATCATTGT GCTACTAAGC TATGAATTAC TATGTTTACC TTAATGGATC TTTTATTAAA 000560
000561 TGTTAAATGT TTCTGTTAAT TCCAACAAAA ACAAGACTGA TAAATAATTT AATACCTCTT TAAATTCACT GTACTCTTCT 000640
000641 TCTGGCATGA TTTTTTCCAT AGAGTATCGT GCTCGAACAC GCAGGGACCC TGGTTCAATA CCTTTTAATG GTATATGGGA 000720
000721 GCTGAGCAGA AACCATTCAT CTGTGGCATG CCCTTTCTGT AATCGGCTCA ACTGGCAGCG CATAAATACT TGGGAAGAAA 000800
000801 AACAAGCAAT TATTGTTTAA AAAGAGAACA CGATAATTAG TCATGCAAGT AAATTTTCCT GGTGTTCAGT CTTCCCTATG 000880
000881 GTGTTAAATG CTTTTCATTA AAGGAGTTTT CAGTAACATC ACAAA
[back to top]

Predicted Small Protein

Name ENST00000607486.1_smProtein_125:298
Length 58
Molecular weight 6500.7899
Aromaticity 0.105263157895
Instability index 52.9228070175
Isoelectric point 7.75628662109
Runs 8
Runs residual 0.0135964912281
Runs probability 0.0458289171525
Amino acid sequence MAIPYLPCLFLCHLVCITTTIQAFREEKSSVGCWPVVFGLVHIHVIKHRLHEVPFAV
Secondary structure LLLLLLLLLLLLLEEEEHHHHHHHHHHLLLLLLEEEEEEEEEEEEEELLLLELLLLL
PRMN -
PiMo -