ENST00000607862.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000607862.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
antisense |
Length |
6001 nt |
Genomic location |
chr13+:78493824..79158297 |
Exon number |
3 |
Exons |
78493824..78494053,78848388..78848472,79152612..79158297 |
Genome context |
|
Sequence |
000001 GATGCCTGGA CAGCATCAGT AGTAGTTGCC CGAGGGAGGG GGGCAGTCCT CGTCCGGGGA CAGGTCCCAA AAGGCTGTTT 000080
000081 ATTTGTTAGA GTTCTACGCT CTTCAAATGA ACCCAAATCA AGGGCAAGTT ATCACGCACC ATGTGACACC CGGCAGCTCC 000160 000161 AGACTAGAAC AAGGCTCTGC ACTGAACGTG ATAATTGAAC TTTTAATGCC AAGTGTCACT TTTCTTTCAG ATGCCAATAT 000240 000241 TTTACCTCTT GGGTACTTTC TGTGTAGAAG ATTCATAACA AGAACAATAC TTATTCTGCA ATTCTTTATA TAAAGTAAGA 000320 000321 AGAAAGCCCA AAGACAAAAC CAGAGGCAAC TGGCTGCTGC ATCGCCCACC TAGTGGCAGT AGTGTGAGCT ATGGACAAAA 000400 000401 GATCTAAGTC TCCAGGACAA AGAGTTGTGC AGCTGCTCAT TTTCCTGTTG ACTTCTGTCT AAGACTTGGA GATGTTTGTA 000480 000481 AGATTGGGAC CTACCTACAG AGGTATCACA CTCCTCTTGG TCTAACTCAC TCTTGAACTG ACATTCGTGG TGAATTTCTT 000560 000561 TTGTCACTTA GCATATTAGA AGAGATGTTT TACTATAATT CTCACAATCA ATCCATAAGC AAGTGGTTAA AGGCCTTTTT 000640 000641 GTACTTAGTT ATCTCAGCAC TGTCAGGGAT GGCTAAAGAG AATAAGCATG GCCTCTGCTT TCCATTTTTT AACATATGAC 000720 000721 AACTAAAATA CAAAAAAACA CAAGTTATGA CAAACATATA ATGCTTCCTC TAGACAAGCA TTGCAGCTTG GCATTGCACT 000800 000801 AAGTGTTTTG ATACTAATCC ATTAAATTCT CCCACCACCC AACAACGTAG AATATATCAG AGAGTGAAGC ATGGAGAATT 000880 000881 TATATAATTT GCTCAAGGCT ACAAAGCTAA TAAATGTGGA GCCAGGATTC AAATGTAGGC ATTCTGATTC CCTAGTCTAT 000960 000961 GCTCTTACCC AGCATGTTAT GCTGATGCTC AAAACAGTTG AGTGTTATAT TAATTTAAAT AAAAAAGATA AATTAGAGCT 001040 001041 AGAGAGTGTG TAATAGGCTC CATGGAGAAA GTCAAATGGA CTTGGAACTT GGCAACTGAA GAGACCATGG CCAGACAAAT 001120 001121 GGCAAGAAAT TCTGGCAAGA AGAACAATAG GCATGGAGTG TCCGCAGCAG AGGAAAGAAG CCAATCTCAC TACAGTGGAC 001200 001201 GGAAACAAGG AGAAATTAAA TGAGATCATT AGAATGGAAA AGATTGTAGA AATCCAGATA ATTTATAGTG AAAATTGAAT 001280 001281 TTCTAAGAGG GTGAAGTTAA AATTGGGTTA ATAGACACTA TCTCAAAAAT GTAATCTGTT ACATTACAAC AGAAACAAAG 001360 001361 CTTCTCATGA CATGCAGAGA TCCATAAATG ACTGTTTTAC TTTTGGCAAA ATTGAAAAGA GAATAATAGT GACTGCAGGG 001440 001441 TCAAGATTAA TGCATGCTGA TTTTTAGGTA ACATGGGAGA ATTAAAGAGC CAGAGTTTCA CTACTGGCCA CCAACAGTCC 001520 001521 ATTTTAATGT GTACTCAGTC TTTGTGACCT CTGTCCATTA GAGATATATC AAACTTGTAT TTAAACTGAA ATGTGATTAG 001600 001601 AGCCATGAGG CCTGCCTGGA GGTAAAGCAG GTTGAGAAAA ATTTCCTCAA TGACACATTC TCTATGGAAA GTCTTTCTCA 001680 001681 AAGGAAAAGA AATTGTGTCC TACTGGCAAA AAGCAGAAAA GGAAGTGGGG AGGGGAAATG GAAAAACATC TAAACCATCT 001760 001761 CTGGGGAAAA GGTGATACTA AATATAAACT GGCCATCAAC ATAGTGAAGC TGAAGAAGGC AAGGGGTGTC TAAATGTATC 001840 001841 ATCAGAAAAG TTAAGAAACA GGGCAAAGTA GGCTAGCTTA GGAACATCAA CAGAATATTG GAAGAAGAAC AGGGGGCAAT 001920 001921 TTTATAACCT CTCAATCATT TCCAACTTCT TACAGTGCTC CAGAAAAGAA AAAGTGTCCT TGATAAGAAT GATTTATTGA 002000 002001 ACAATTATCT CTTTCCGCCC TCAGCTCTCT GGAACTGGAC AACAGACAGA TCTGGTGAAT TATAATTATG GAGTTCTCCA 002080 002081 GAAGAACTTC CTCTCAAGGA TGCACAATTT TCCAGTTAGT CACAAGGCAG CATCACAAGC AAAATGGGGC TCTCTCTTTA 002160 002161 TTTAACAAGG CCTATCTTCT ACACACAGTT TCTGCAATTT CCGCTTCTCC TTATGTGTAT CTTTCTCTGC CCTTTTGTAT 002240 002241 GTTCCACTTA TGTAGGATTG TTTGCCCCAC AGTCACACAC AATACAATCA TCATGCTAAC CCCCTCCCCA AAAACTCCCT 002320 002321 ACTCCCTTTT CATCTCTCCC ATTGCTCCTC CACACTGGTC CTGCGCTGGC CTGTTTGCTC CCTGAGTAAA TTAGATCCCT 002400 002401 GCATGTGCTG CTCATCTTCC CTCCCTCCAC CTTCCACCAT ACTCTCTTCA TGTCCACATC TGCCTCTTGG CAAATGCCCT 002480 002481 GTGGAAGAGA GATTTTTCCC AGGCTCTCCT CCCTTGTAGG TCTCTTTGTG CCTCCGCATC CTGAGTTTCC TCTGACTCTT 002560 002561 GTTTCTTTCT GCTTCTTGTG ACAGCTATGG TTACAGCTAA CAAGCATGGG AGGAAGGATC TGAGGGAAAG TTGTGCTTTT 002640 002641 GGTTCACTAA ATCCTTAGAT TTGATTTGGG TAGTCAGAAA GTGCTAAAAA GTTTGTTTCA ATGGAACATC CTGCAGTCCC 002720 002721 AAATGGGGTA AACTTATCTT GTTTTTCATC TGCTGTCATG GTTAACTGGC AACTTCCAGG TACAAGGTGA CTGTCTGGCA 002800 002801 TCTCAGGTGC ACACATGAAG GCAATTTCAG AAAGAATGCC TATGGATTAC AGACCATTCA GCTGAGTTTT ATCTGGGGCT 002880 002881 TTCTGGCACG GAATATGTAC CAGCATCTTA GATCAATTCT GGCACATTAT TTTAAAAGTT TTTTGTTCCT GAGTTCCTTG 002960 002961 GTACCTGATC ATTCCAATAT TTTCTGCCTT ACAAAGTCAC AGGAAAACAG GTTTGGAGCT GAGTATTTTC AATCACCACT 003040 003041 GACTTGGTGA CAGACACTAA ACTCATTTCA CTTAGGATTA TAGGTTGAAC TCAAATTGGG ATCCCTGAAG AGAAAGACCA 003120 003121 GTCCTTTATC CAGTACCTTA AGGAAAACAT TTCTTATTTC CATTAACAAC CAGAAAAGGA AAGACAGTGC AACAGCTGGA 003200 003201 AGAGCACTGC AAATATCAGG GTTACAAAGA GTAACCCAGA AACCTTTAAA ATAATTTAAA GTGGTGATAA AACCAGTAAC 003280 003281 ACACTGCACT TCTATTAATG CAGTAATCCT TAACCCTTGA ACCTAACTTG TACTTACACT AAGAAGTCAG AAGAACTGTT 003360 003361 TTTACTTGAT CTACCAAGGC AATTTCCCAT AGTTTGATTG GAAATAGTGC TGATGATTTT CTCATTTAAG TTATCTACAA 003440 003441 AGCACTAAAA AAAAGTGACT CTGCTGGAAT TATCCTTCTA AGAAAATAAG AAAAAAATAG AAATTTCTTA CAACTAAGAA 003520 003521 ATGGATCAAG ATAACATTGG TCTGTGAGAT TTAAATCTAT CAAAATATGT GAGCATACCA CAGATATGAT TTCTTCAGTT 003600 003601 CTCTGCAAGG TAACCAAAGC AATTCCAAGA AGTCTTATTT TATTAGAACT CAAATTTATT AAGTATGACC TATCTAAGAT 003680 003681 CATAGTGGGC AGACAACTAC CTTGGACGTG GGGTTAAGAG AAGATAAAAT TCAAAAGTTT GAAAGTAAGT AAAGGATAAG 003760 003761 CAAGATTCTT TGAATGATCA ACAGCACTCC ACAGGCACAC AGAGACACAA AAACAGCTAA AAAGGCAAGG ACAAAATTAA 003840 003841 ACAGTAATGA TGATTTATAG TAAGATACTC TGAGACATGA TAGAAGTCTC AGTACACCAA AAGGAAAATC TTGTTTGCTC 003920 003921 AAATTATTTG TTTCTTCTGT CTAATGAATG TAATTCTAAT ATACAAGTGA TAACACTGGC ATTTCTTTGA AATGTTGATT 004000 004001 CAGTTTAATT ATGAAAATCA CCAAGGTATT TTCTAGCTGC TGCATCACTC CCTGTACTAA GATTAATCAC ATCAACATCA 004080 004081 TTCATTTAAT CTTCAAAGAG GAAGCAGTTG TCCACAAAAG CCTTCAAATA GCTTCATTAG TGCAATTTTT CAGTCTCAAA 004160 004161 CACTTAGCTA GCAGCATATG ATTGAGAGTA AGGTCATTAT ATTCATCTAT TTCCTAATCT AATTTTTGTA ATGTTTCTAC 004240 004241 ATTTAATGTA GGAATGTGTA AGTGTGGAGT TTTTGCCTTC TCTTTGTTTG TAAAACAGCT CAAAACATGA AGAAAATAAT 004320 004321 GATTCTAATT ATAAAATATT TGATTGCTAT GGTTTTAAGT CATGAAATTT AATGTACAGG CCCATGGCCA GTTCATTTTT 004400 004401 TCTTTTTTCT TTTTTTAATG TGAAAAGAAT TTAGTGTAGA AATGCTCTAT TTTCTTGTCT CTTGTAGACA AAGAAAAACT 004480 004481 TAGCGCATGA GAGACGTGTC TGACTTCAGA AACTGGAATT ACAAAAGTCA CTGCAAATAA AATTTCTTTG GTGTTTTAAA 004560 004561 ATGCAAGATG AATTCTATAT TTAAAAACAG AAGCCTCACT TATGTTTCTC TAATAAGACC CATTCTTAAC ATCCTTTTCT 004640 004641 TTGATGAAAG CATTAATATT CCCTTTCCTT ATTGGAAACC AACAGGTATC AGAGTCCCAC AAAATAACAC TGTATTGTTG 004720 004721 ATGCACCGAT CAAATCATTC TTTTAATCAT TAAAAATTAT GCAGTTGCAA TCAAAAACAT TCTCAGAGAG ACTTAGAGCA 004800 004801 GAGCCTGGCA CCAGCAGGGT GTGGTGATAT AGTCATTTGT AATTACTGTA CCTACTCTGA AGGGTTATAA AATGTGTCAG 004880 004881 AAAGTAAAAT TTGCTGAGCC CCATTACCAA GAAGCAAAAC TTACTAACTG GTGCTTTAAA CTTTGCATCT TATAAAGGAA 004960 004961 TGATTTATTT GACTTTTGAC TGGTCCACTT GCAGAAATCA TTACATTGCA ATATTCAGTG ACTGTGCAAA GGGGAAAAAA 005040 005041 AGGATAAATC ATACAGAGAC ATTCTCAAGT TAACATCTGG CGAGCATATA AGGCCAAATC TGTAAGGCAA GATCTGCCTA 005120 005121 CGATGGCATA AATAATGGTG TGTATTTGCA GTTTAGGCCA AGGGATAAGG GCTTTTGATC ATAAAAATAG TTCATAACCA 005200 005201 ATTGCAATGA GATGATGCAA TTGTAAAAAT TTTGTTTCCA CAAACTGTAT AAAGACAATT ATGATATTTT AAATATTAAC 005280 005281 CCCTTTTAAA TTGTTTTCAA ATAAAATTAT AACGGCTTTT TGTAAAACCA AATTCTAATT GACCCAATCA AATTTTAAGA 005360 005361 TAAATTATGA AGGTGAGAAT AACACCAGCT TGAAAATATC AGTTTGCCAT TTGTCCAGCT ACATGCAAAG TCACCAGAAT 005440 005441 AAAATGGAAT TATATGAAAG AGGAGCAATA AACTGCATTA TTTACATGTG TTCAATATTA TAATCAGAGG TAAAAAGTGT 005520 005521 GTTTTTAAAT ATTTGTACAC ACAAAGTTTT ATTATCTACT TTACATAATA CTGTGTTAGA CACACTGGGA AATGCAAAGA 005600 005601 TAGAAAAGAT AAACTATCTT CTCCTGAGAA GCCTTTACTA TGGTAGAAAA GATAGGAGCA CATGTCATTA CAATAAGAGG 005680 005681 AAATGTGAGA TAAGTGACCA AAGAGGATTT TTGTCTTAAA AAATCCTAAG TTTTTATCTA AGAGTTTACA AGTAGATTCT 005760 005761 TCTGAGCCAG AACACCATGG AAGGTTTCCT GGCATGATGA CATATGAGAT TCAAGGAATG GGTATTATGT TCAAAGCTCA 005840 005841 AGACTGGGGA GAGAAGATTA CATTTTACAG TTTAAAATAT TTTATTTACC TTTCCCAACA CTTATGCATT TGTATCTTCT 005920 005921 GCAGCGAATG ATAAAATTTC TTTTGTTTTC AGAAGTGTCA AGATAATTTT TTATTAAAAT AAACAAATAA ATTCGAGAAG 006000 006001 A |
Predicted Small Protein
Name | ENST00000607862.1_smProtein_4010:4180 |
Length | 57 |
Molecular weight | 6311.5499 |
Aromaticity | 0.0714285714286 |
Instability index | 50.6696428571 |
Isoelectric point | 9.30303955078 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0170969288616 |
Amino acid sequence | MKITKVFSSCCITPCTKINHINIIHLIFKEEAVVHKSLQIASLVQFFSLKHLASSI |
Secondary structure | LEEEEEELLLEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooooooooo |