ENST00000609089.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000609089.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
5141 nt |
Genomic location |
chr2+:226563230..226568370 |
Exon number |
1 |
Exons |
226563230..226568370 |
Genome context |
|
Sequence |
000001 GCAAACGGTA TTCTGGGATA CTGCCATATG AGTGTGTGCA GGATGGTGTG AGCTCTACAT TTCTTAATAT GAAGAGGGAG 000080
000081 GTCGACTCGG TCATATGATA ATGAACTGTT ACATATCTTT TCTGTGGGAG TGGAATGCCA CGGGAAGCTG TGCCTATTCG 000160 000161 TGGCAAGTTC AAGATAAAAT GCATATGTCC TTGCAATGAA GGCACACTTA TTTATCCCGG ATTATTTTGA ATCCAGAAGA 000240 000241 TATTAAAATG TAAATATTTT ACTAGTTTAT GGGTGACATC TGAAATAATA CACATTATAC GTATATAAAT TACAGAAATA 000320 000321 TCAAGAGTTT ACTATATGAT ATAATTTCAG TATTAACTGG TTTGTTATCT CTTTTATATG TAATCCCTTG ATGCCTTTTA 000400 000401 TTATTAATTT TTGCATTTAA AATGTTTTTT TTCCCTTGCC CACATTTGGT TTCTGTACAA GAGCTCACAA CTATAAATCA 000480 000481 TGTTCAATCA CGTAATATAT GATCTGGTGC TAGTAACGTA GAAGTTGAAT ATCATATTTG TTAAGAGCAT CTGTGCTTTT 000560 000561 TAAGTTTCAA GGGTTTGACA GGAAATGAAT GCAAATGTGA TGCTTAATTT GGACGTCCAA GTTACATTGA CAACAATATT 000640 000641 TTTGCTACAT TGGCTTTATA AGAATTTCTC TTTAGCATCC TCTGGCAATG GTTAGGCTAA CCATTAGTCT GACTTAGTAA 000720 000721 TAACTAAGCA ATGGTTAGTC AGACTCCAGA GAAAGTTACT AGGATATATT GGACATCCCA GCAGAAAACA TTTCCTTCAG 000800 000801 AAATGACTTT AGGGACATGT GTCCTTGCAT CATTGATCTG ATTGGAGGAG ACCAGGGTTC ACTGTGACAA TGGAAGGAAC 000880 000881 AAGGAATTAA TAGCTCAAGA GCATGACTGC TTTCAAGAAA GTGGGACCAG TGGCATTGTA GCCACCATAA TCACTATATT 000960 000961 TAAGTAACTT TTCATGTGTA TGCTTGTTTC CCCAAGAAAA TGAGAAATAA ACATTCAACT AGACCAGTTT ACATATTTTA 001040 001041 ATACACTAAA TGCCAATCTT TCTAAAAGTT TAGATCTATT AATAAAATAT GTATTTCTTG TTAATTTTTT CAAACTGGTT 001120 001121 ATCACCACAT TTCTGGGTCA TAATCTTCTG TATGTGATCA TCACACCCAT TCTTACTGAT TATGACACCA TGACCAAAGA 001200 001201 ATTATGATCA TGTTTCATTT CATTTTGTTT CAAGAAAGAG ACAGGAAATG CAGGGGATGA GGGATGGGGT GGATTCAATT 001280 001281 TTATGTAGTG GTGAAATTTA AGTTAAAAAA ATCATATATA TCTTTTAAGA AGAACTTGTT AGTTGAATAT AAATATTGCC 001360 001361 ACGAATGAAT AAAAAAGAAA CTATCGCATA TATTTTGTAT ATTTAAATTA CTATTTATGC CTCCTAAAAT TGATAGTATG 001440 001441 TGGTTCTTTG TTAACAATCA ATTTAGTATT ATATTTCTGA GAGAAAAGAT GTGTTTTTGA AGTTATTGTT ATAGCAGTTT 001520 001521 TTCTTGTAAG GGTATTGACA GCAATAGTTC AGTGCTGCTC AATAAAACCA AATATAACAG GAGTTAGAGA ATCTTTGTAA 001600 001601 TCTATATTGC TACAAACCTA GTAATGCTTT ATCAGTAATA GTTTCTTTCA AAAGCCTTTT CAATGTTATA ACATGATTTT 001680 001681 CTAATGTTTT ATAATTAATG TGTATTTTGA TGTCCAATTC AAATTCTGAA AAAATAAGGA AAAAGGTAAG TGGGAGCAGT 001760 001761 GTATGGTTGG TGTGTCTGTG AGCGTGCGTG CATGTGTGTG TGTGTGAGTG TGTGTGTACA TGAACGAATA CTCAGTGGGA 001840 001841 GAACTGTATA CATAAAACGC TTACTGAAGT TGCAGGTTCT GCTTGTATAA TTGAGGTGGT AGAAAACCGG GATCACAAAT 001920 001921 GCAGGAAATT AGGAAGGGAT CTTAAGTAGC TTAAATAAAA CCCGCCAGCA TGTTTCACCA GCTATAGATT ATGTTTCAAA 002000 002001 CCAAATAATC TATGAAGCAC AAATCTAAGG GTGATGAAAA TGTGTTTAGA TAAAATCAGA ATGGAAATAA AATGTGTTTA 002080 002081 TGACCCAAGT TGTTATCCTG ATTTAAGTTA TTATGACCAC ATATACTCAA GCCTATCAGT CAGACACAAG ATACTAATTC 002160 002161 TCAGCATGTC TATGATTACG TATATATTCA GGCTCAGTAT GGTGATGATT AACCCTCCCT TAAAATTTAT ATTTAGGGAA 002240 002241 CATCTTTCTG TGGGGAGATG CAAGTGTGTT TTTCAGATGC GTATCTTTCC CATATCACTC TGATTTAGGC AGAAAGTTTA 002320 002321 TTTAATGTTG GCCATTTGTC AAGAAGGAAA CAAAAGTACT AAAATGATCT GTGTTGGATT AAACCATTCC TGTTTGTTCT 002400 002401 ATCAAACTTA TGCTAGGGCC AGGTTTCATG CACTCCTTTT TCAAATGCAT TATTTTCTGA GGCGGTAACT TGTTTGAAAA 002480 002481 TTTGACCTTA GGCAACCATT TTCATTTATT TCCGCAAATC TCTACTTAAG TGGAAAGTGA CTGAAAGATC TGGAAAAGTG 002560 002561 GCTTCACTGA GATTTGACTC AAGAACTGTT ATTCTGTGCC TATACGATTG TCCACTGTGG CAATAATCAT TCCATGATCA 002640 002641 ATTTCCTTTT TGTGTAGTGT TTCTCTAAAT GGAGAAAAGG AGATCATTAG TATGTAGAGA AAAATAAGCT GACTCTCTGA 002720 002721 AAGTAATCAA CTGGGATACT TCAATATATT AATTTGGTCA GAATATAGCC TACAGATAGC CAGAACACTA TGCCATGATA 002800 002801 AAGCTCATAT TTCTAGCAGT GCCAAAGAAC AAATCATATC ATGGCCTGGT TATCAGGTTG AAAGAGCTCA TACTTATGAA 002880 002881 AAATGGTCCT TTCACAGCAA ATTTCATAGA AACAGAATTT TATTGGATGT CACAAGATGC TTTTATATGT GAAACACTCC 002960 002961 TTAGCAGAGA AGATATAAAT TTCTTTAGAA TTGATGAAAA GAAAATATAA AAATCTGCAT TTATTTCAAT CGCAGAAGCC 003040 003041 AGCATCCTCT GAGGTATAAG AGTAGTCTAT TACATAAACA CCGCTCACAT CTCTCCCATG TTTATGCTAC TGAAGCAAGC 003120 003121 TTGGCGCCAA ATGTGATGGA TTTATGTAAA TGAAGGTTAA TACTCACCCA TGTAAAATAA TTAGAAAAGT AAAACAAAAC 003200 003201 GTCCGGAGAT TTAAATTTGT AGTTTTAAAG TATTATATAT TCAAATACAT GCCAATTGTC TGGAGACAAC TAGATACAAC 003280 003281 TTTACTTTCC AAAGTAGTGA CAAAATTTTC TTTGAATGCT TCTAGAGAAT AAAAGAATGT TTTTATTACT ACATTTTGTT 003360 003361 GGTAGGTCTT GCCTATACAT GGAATTTAGT TTGATTCTTT TGAGCAAATC TAGTGACTAC GTCAATAAAA CTAAAGCCAT 003440 003441 TGGGTTATTA TTTTAACTAA TAAAATAAGA CATCAACACA ATGCACGTAC AAATGCAATT TTAATATCAC TTCCATGTTA 003520 003521 AGACAAGTAG AAAAGAGCTT GTAAAATAAC TACACTCACA TGTGAAATTA AGAAACAATT CCTACGATTT AAGCAGTAAG 003600 003601 TTATCCGAGA TGAGAGGGAA TTCACACTTG CAAAGAAATA GAAGTAGAAT AGATAGCAAT TCACAATTCA TTGTGTCCCA 003680 003681 AACTTAAGTG GAAATAAAAG AAAAATGGTA CCTATAGCAT TTAACATTAT GTCACTACAT CTTCCATGTA TACAAAATAG 003760 003761 ACAGCTAATT GTAGAATGTG GACCATTTTT TACTAATCTG TTATTTAACA GTTGATTATT GAGCAAACTT ATGTATCAGG 003840 003841 CATTTAAAAA TTCTAAAGCA CTTGGTGTTA AACATTGAAA AAGATGTTGT CCCATCCTTC AAGGAGCTTA ATTATGCAAT 003920 003921 CATCAATATT TTCAAAATAA AGCCAATTGT TTTTAAGAAG ATATACAATT GTGTTTACAT ATGGCATTCT CTTTTTTTTC 004000 004001 AGATCAAGTG TATAGTCAAG GTAAAATTCT AAACATACTA AACTTAATGT CTAAGTATAG AATATGTTTA TGTGTAAGCC 004080 004081 TCGATGTGTG CATATATAAT ATGTACTGCT GTCTATGTAA ATCATTAAAA GGGTAACACA TTTTGCCATG TTGGACTTGA 004160 004161 ACATTGTGAC TTGGGGTTTG GATGATTTAA AACTCTTTGA TATTTGGGTC AATTACATTG CAGCAAAATG TGTGTAATAT 004240 004241 GGAAAAAATG TCTTATTATA TTTCCCTTTA AATATTATGA AGTTTCAAAT TTAAGGGGAA TTTTTTTAAA GAAATGCTGT 004320 004321 TGGATTTGTC TCAACCAAAC ATGAAAATTC TTTTGAAGTG TTCAATTGTT CCCAAATATA ACTGGGTTTG CCCACCCTAA 004400 004401 AAGCATCTAC ATTTACACAT GTATACACCC ACGTACAGTA TACATACTGT ATATAATATA TATGAAAATG TTTAGTATGC 004480 004481 ACTTCTTTTG ATTGGAACTC CTTAAGTTAA CATTTATAGT GTAGCAACTT GTGTAAAGTG CACTGTGATT ATAAAAAACA 004560 004561 AAGCACAGTA AAGTCACAGG TCTTGTTATC TTGCACTAAA AATGTGTTTA CGTATTTAGC AGTTGTATGT TTACTTTCTT 004640 004641 GCTCTTTCAG ACAATTGAAA CAAATAGCTA TGAGAAGATG ATATAAAAAT AATATGTTTT TTAGTGGATA ACGGCACTAC 004720 004721 ATTTTTAAAA GACAGGGTTT TTAAAGAAAA CCATTTAACA TCCATTCCAA TATAACATGT TTACCATATC TAAAAATTTG 004800 004801 AATGTCATAT TGCATTTTTC ATAATTCATT AGAAATGTCA GGTATGTGCC TGAAAATTTG TGCAAATAAG CATTAGATAA 004880 004881 CAGATTTCTC TACTCATGTG TTATTAGCCA TTTCTATATA TATAATAATA TAAACACTGA TGTTTTAATG TCTCTTAATT 004960 004961 TTTGTACTTG ATTTTTTTAG GTAACATGTA ATTATAAATG TACTTTGATA CTACTAAAGT AACCAGATGT TGTTTGAAAA 005040 005041 TAAATTGTTT TCTTTAGTGC ATTGACAATA TTTTACAATA CTTTTTGTGA TTATTTATTT GTGCTCCCGT GTAATTATAA 005120 005121 TAAAAGCAAT AGTTTAAATT A |
Predicted Small Protein
Name | ENST00000609089.1_smProtein_2033:2302 |
Length | 90 |
Molecular weight | 10649.8925 |
Aromaticity | 0.123595505618 |
Instability index | 46.1887640449 |
Isoelectric point | 9.24749755859 |
Runs | 17 |
Runs residual | 0.0478078871998 |
Runs probability | 0.0445254943526 |
Amino acid sequence | MKMCLDKIRMEIKCVYDPSCYPDLSYYDHIYSSLSVRHKILILSMSMITYIFRLSMVMIN PPLKFIFREHLSVGRCKCVFQMRIFPISL |
Secondary structure | LLLLHHHHHEEEEEELLLLLLLLLLLLLHHHHHHLLLLEEEEELHHHHHHHHHHHHEEEL LLHHHLHHHHLLLLLEEEEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiiiiiiiiiiiiiiii |