ENST00000609682.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000609682.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
2743 nt |
Genomic location |
chr3+:101395319..101398061 |
Exon number |
1 |
Exons |
101395319..101398061 |
Genome context |
|
Sequence |
000001 CCTGGCAGCA GCTCCGCCGC CCAGAGGCGT CCGAGACCCT CCGACTCGTG GGTACGCATA GGCCTCGCCA GCGAGCCTTG 000080
000081 CCCAGGCAAC GAGTCGCCAG CCCGCCCCCT CGCCGCGGGC TAGGTCTCAC CTCGCCACCA GTACGTCTTG GACAAGTAGT 000160 000161 GCCAGGTCTG ATGCCGGGTG TGGTGAGTGC CGCCGGGACC CAGGTGCGCC GCCTCGATGA GGTCCCGGCG TCGCTCCGGC 000240 000241 TGCAGCACCA CCTCCAGCTC CGCGAAGGTC TTGCGGTGCC GCTGCCGCCG CTGGTAATAC AGAGTCCCGC CGCGCACCAC 000320 000321 GTAGCAGGCG GCAGCTTTTC GGATTTTACG CTTGACATTG CCCTCGGTGC CCGGCGCATA CGGCTCGCGC TCGTTCGTCA 000400 000401 GGTAACGCAG GATGGCCCGG TAGCTTTCCT CGCTTGACAT CGCGGACCGC GGCTCCCTGA GGGCGCCTGT CAGGGACAGG 000480 000481 TGAGGAAAAC GGCCCGCTAC CTACGGGCGG CTGCAGGAGG AGCGGCGGCA CCGTAGGGAG AAACGGCTGC GCCTTTGGCG 000560 000561 AGCGCTCTTC GACGGCTCCC TTAGTCCGAA GGAAAAGCGG GCGAGTTGGT AACCAGGGGG AACTGCACTT CTCCAGCGCG 000640 000641 CGGGATCCGC TGGCGACTGA CAAAATGGCT GCTGCACCAC CGGAAGTGAC GCAAGGCAAG GGCGGGGACT GAGCCCTGAT 000720 000721 TGGAGCGCAC TCTCGTTTTC TGGCTTGATG GAGCCGATCC AGTGACGTCA GGAATGCGGG TGGACATTTT GGAAGCGGGT 000800 000801 AGGACCCTTC ACTGCAGTTC GAGGGAGTCT TTAAGCAGAC ATCTTAAGTC CTGGCAGTTT CTCTTTTCAT TTTTCCCTTT 000880 000881 TCCACGCTTT CTAAGGAGCC ACGTGTAGGG GGAGCTGGTG GACAGTTGAG AGTTCAGCCG AAACATCCAG AGGGTTAGGA 000960 000961 GTCCGTTTTT ACGTTTGAGA CTCCCAACAT CATAAAAGCA TATTTTCAGG CTTCTGGAAA AATATTAGTC TCTTGACACG 001040 001041 GGACCAGAGA CAGCCCATTT ACATGGAAAT TTAGATTCCA GTTAACAGTT ATAAAATTTT CAGTGCCTCC CTCAGTGATG 001120 001121 AGTTATTGTT TCTAAACTTG CACCTGCTAG CTCCAGACTA CTCAAGGAAG AGTCGAGATT CTTTTGGAAT TATCAGCATT 001200 001201 TATAGTCAAT GTTATTGCGA GTGGAAAAGG GGGTCGGTAA CACTATTTTA AGGCTTTATT TACATATATT TTTACACAAA 001280 001281 CGTAGGGGAA AAGGTTCTCC ATTTTGCACC AAATATATAT GAGGGTGCAA GAAGGGGAGC GGACTTGAGC TGCGTCTCCC 001360 001361 AGTGCGTGCT GAGGATGCTA ATACAGGTAT TTAGCTGGTA ATCCCGGAGC AGCGACCCCG GTCACCCTTT CCTGGGACGA 001440 001441 ATCTGCAGCG CTCACAGGGG CCCAGGGCTG ACATCCCTCC TCGGGGACTG GGGTTGGACA CTGTCGCCGC TTTGCTAAAG 001520 001521 CCAGAACATT TCAGGCCGAG GGCTCCAGCT GCAGACACGG CCTAGTACAC TTCTCCACCG GAGGGTCTGT AGTCTCTGGG 001600 001601 TGAGGCCCTT TGACGCTCCT AGAAGTAGCT GACGGGCAGA CAGGTGAATA CAGTAGGCTC GAAAACAGAA TCATACAGCC 001680 001681 AGCCTCTGGT GTTAGGGGCG TGTTTTTGTG TGTGTGCACA CGCAGTAATT CCCGGATGGC CCGGACATCC TTGAAAGATT 001760 001761 CCAGGTGCGG GGACATGAGC TCTCAAGGCC CAGAAGAAAA AAGAAACTAC CAGGCTTGGG ATCTACTTAG TTGCTGAGTT 001840 001841 TGCCACTATA GCTCAAAGGA GGAATTTAAA AATGGAGATG CACCTCTTTC CCCCATGGGG TCGGGCAGTG AGAGCAGAAG 001920 001921 ACCAAATGCA CCCTCTGCGA ACCCAGGAGG CTGGTCTACG TGTCAGGCCA ACCCCACTCT CCTGTCATAC TGTCTTTAAA 002000 002001 TATTTTGGCC GGGCGCGGTG ACTCACGCCT GTAATCCCAG CACTTTGGGA GGCCGAGGCG GGCAAATCAC GAGGTCAGGA 002080 002081 GATGGAGACC ATCCTGGCTA ACATGGTGAA ACCCTGTCTC TACTGGGCCT GAAGTCCCAG CTACTCGGGA GGCTGAGGCA 002160 002161 GGAGGATCGC TTGAACCCGG GAAGCAGAGG TTGTAGCGAG CCGAGATTGT GCCACTGCAT TCCAGCCTGG GTGACAGAGG 002240 002241 GAGACTCCGT CTCAAAAAAA TAAAAAAACT AAACATTTTA AGTTAATTGA TATTTAATAT TAAATATTTA ATATATTAAG 002320 002321 TGAATACATT CAAATCTGCA AACAATACAG CTAGGTTGTA GAAGAGTTAA AAAAATCCCT CCACTCAGTT TTTGCCAAAA 002400 002401 CACCACCTGT AAGCACTGAG AAGCCTACTG ATGCACGCAT TATCCTTTGG GCCAATAGAA ACAAACGTTT TAATAAAATG 002480 002481 CTTTCCCAGT GGTCAAATTG TCTTCCTGAG TAAAGCTAAA CTTGCTGTAG TGAGAACAGG TAGTGTTTAT TTCTAGCTTC 002560 002561 TTCTGGGTCC CAGGTTACCT AAGACCCAAG GGTAATGACA ATGGGCAGCT CCACTTTATT AAAAGCCAAC ATTTAGCCCA 002640 002641 GACATTTTAT TCTCCAAAAA TCAGCAAGCA TAGCTTTACA TTCAAGTTGG GTATAATGAC TTTATTTTCC CAGTAATTCC 002720 002721 CTAAATAAAA CTATTACAAA AAA |
Predicted Small Protein
Name | ENST00000609682.1_smProtein_170:436 |
Length | 89 |
Molecular weight | 9348.7584 |
Aromaticity | 0.0340909090909 |
Instability index | 62.6272727273 |
Isoelectric point | 11.1549682617 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0335969453617 |
Amino acid sequence | MPGVVSAAGTQVRRLDEVPASLRLQHHLQLREGLAVPLPPLVIQSPAAHHVAGGSFSDFT LDIALGARRIRLALVRQVTQDGPVAFLA |
Secondary structure | LLLEELLLLLEEELLLLLLHHHHHHHHHHHHHLLLLLLLLEEEELLLLLLLLLLLLLHHH HHHHHHHHHHHHHHHHHHHLLLLEEEEL |
PRMN | - |
PiMo | - |