NONHSAT000877
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000877 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2706 nt |
Genomic location |
chr1+:11128528..11133154 |
Exon number |
2 |
Exons |
11128528..11128770,11130716..11133154 |
Genome context |
|
Sequence |
000001 AAAAAAAAAA AAAAAAAAAA AAAGTTTTAT GAGTTGCTGG GGTAGCTGAT CAGTACTGTC TGCCCTTGGG AAGAAATGAG 000080
000081 GTGAGGAAAA AGATATGCAA AGGAATGGAC TCCTGGATGG GCCTGTCTTC TCAGCAGAGG AGGAGGTCAA AAACAGGCGC 000160 000161 CACCAGCGTG CTAAAATCCT CCAGGAGCAG TTCTTACCTT GCCAGACGGG GTCTGTTTAT TTGGATCAAA CTGAGAAGAA 000240 000241 ACTTTGGATT TGCTGTTTCC TGAAAGTTGA GTGGTCTGGC ATATTTACCA TAAACACAGT GGAAGAAGGT TAAGAGGAAT 000320 000321 TACAATATCA ATCTTGTGGA GGTTTCGGAA ATGAGGTAGA CACTAATAGC CAAGCTAAGG TGAACCGGAA AGAAGTCAGG 000400 000401 ACTTAATATA AAGCACAGGG CAAGCCCCCT AAGATATCCA AGGAAGATCC TGACCACAAG CAGGGGCATC GTTTTTCAAA 000480 000481 GGAAAAAGGA GAAAAGCTGG CACATACCAC GACCTGCTGT CGGACGGAGA TGGCCTGTTC TGCTGCAGCT TTGCACGCCT 000560 000561 CCTTTGCCTG TTCCCGGGCA GCTGCAAGGG AGAGAACTTG TCTCTGGAGT TGGTGAATCC AGCAACCACC CTCCCCTCCA 000640 000641 TCTCCATCCC CCTCCGACTT GGCCTAGCCA CAGGGGTTGT CACGGCTGAT TCCTCCTCCC TCTCAGGTCC CCGGTCCCCC 000720 000721 ATCTCTGCAG GACAGGCTGC CTCAGAGCTC AGGCTCAGGT GCTCTGCCCA CCTTCAGCTA CACGTGAGCT GATCCTCCCC 000800 000801 AGCCCTGCCT GCTCCTCTTC TGTGAACCTA AATGCTCAGT GGCCTGTGGA CCTGAGGGCG TTTAACAGGA TCGTCACCAT 000880 000881 CACCATCGTG GACAAACCTG CTCAAACCAG CTACTTTGGC TGCCAGCAAC TCCAGCTTTC CAGCTGCTCA GGACAAAACC 000960 000961 TTCATCCAAG GTTCCCTTCC CTTCTCTCAC ATGCCACATC CACCTCATCA TCAAATGCTG TCAGCTTTGC TATGGGACAG 001040 001041 ATCAAGGCTC TGACAGCTTC TCACCACCTC CTCTGCTCCC ACGCTGGTCT CAAAGCCACC ATCCCCTCTC GCCTGAGCCA 001120 001121 CTGCCATGTC TCCTATCCCT TCCTGGACTC CCATCCTGTC CTCTATAGTC TACTGTTGAC ACAGCAGCCA GAGTGCCACA 001200 001201 TGTCAGTCAC TTCCCCCCCT GTCTGCTCAG CACCCTCCTG GCTTCTGAAC TCGGAGTAAA AGGCAGCGTC ATCCCGTGGG 001280 001281 CCTCTGCTGG CTCCTTCCCC ATCTCCTGCT CTTCTCTACC CGCCTCTGCT CATGCAGGCC CACTTGCTGC TGCTCAGCAT 001360 001361 GCCCAGTGAA CTAGCCCCAG GGCCTCTGGG CTCGCTGTGC TGTGGCTCCA GAACTCTTCT CTAGGTCACT GCAGGTCTCG 001440 001441 TCAATGTCGC ATTCATTAGA CTGCCTTCTC CAACCACCGA GACAGCTACA GCACCTCCAG CACTCCCCAC CAATCTCTCT 001520 001521 GCACAGCACC TGCTGCCATC TGCCAGGATA GATACTGATT GCCCACCATC CCTCAGCAGA AGGGAAGCCC CACAGGGGCT 001600 001601 TCATTCATCG CCGTATCTGG CACTTGGCTG AAACAGCGGG TGTGCAACAG CCATTCTTTA ACAGCCGACT GAGTTGCAAG 001680 001681 GAAGTGAGTG TTACCTGTTT GCTCAGCTGC CTTCTTCTTG ACAGCTTCTT TAGAGTCTTT TTGTACTTGT ACCTGGGCCA 001760 001761 GCTTCCAACG GTTGCTGATC TATAATGAAA GCAAATATAA CAAAAAAAAA CCCTCCAAAG TCAGCCACCT AAGTCTGTCT 001840 001841 TACTTTTCAT GAGGTGACGA AGGGCAGGTT AACCTAAGAA GTACACACAT TCTAAGTCAT AAATTTTCAA ATCTAAGGGC 001920 001921 ATGAAAAATA AATTTCATGC TGGCTTTATT GCTAAAATCC CTATTAAGGA CAAAGTGCTA CTGTCCTCCA GGCACTGGGC 002000 002001 CATCCATCAT CTCATTCAAT CCCTCTGTAA CCCTGGGAAA AAGGTACTGT CATCACCCTC TCTTTAGAGA TGAGCAAACA 002080 002081 GACTCCGGGA GACTAAATAA CTTGTCCAAG GGGCATGGTC AGTAAATGAC AGAAGCAGAC TCAAGGCTGG GCTTCCGCAA 002160 002161 GTCTGCTGTG TTTCTTTATG ACACCCCACT GACCTATGGC GTTACAACAC ATGGAGGTGA CACTGGGCAT AACACACAGG 002240 002241 ACGTGCAGTT GTTCAGTGTG ACATAACCCG TGGGGGGAAA AGAGGAGAGA AGGCAGAAGC CCCACCTGAT TCCCCATTTC 002320 002321 CAAAAATAGC AAGCTAACTC AGGGACAGGA ACAGGGCTGG GGGACCTCTC GGTTTTGCCT AACAAAAGAG CTCTGCTGCC 002400 002401 ACACAGAGGA AGCCAGTCGC CCATGTCATC AGAGCAGACG CTTCCTAAAG GGAGGAAGGA GGCTGCGAAC AACAGTTCAC 002480 002481 GTTCTGGCTC TGGGGAACAT CTCAAGAGGG TCTAGGCGAG GTGTGCTCTC ATTCTTACTC ATAATGCTGG TAAAAACAAG 002560 002561 CCAGATAAGT AAGATAGAGT GTTTTAAAAT TAAAGCTGTC ACCTTTAAGA GCCTTAAAGT AACAGACATC TATAAAAATG 002640 002641 CATCAAGCTG TATATTTAAT ATTTGTGTAC TTTACTACAT ATAGATTAAA CCTCAATTTA AAAACC |
Predicted Small Protein
Name | NONHSAT000877_smProtein_1031:1258 |
Length | 76 |
Molecular weight | 8176.3921 |
Aromaticity | 0.0533333333333 |
Instability index | 67.3906666667 |
Isoelectric point | 7.04071044922 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0314333941785 |
Amino acid sequence | MGQIKALTASHHLLCSHAGLKATIPSRLSHCHVSYPFLDSHPVLYSLLLTQQPECHMSVT SPPVCSAPSWLLNSE |
Secondary structure | LLHHHHHHHHHHHHHHLLLLEEEELLLLLLLLLLLLLLLLLHHHHHHHHLLLLLEEEELL LLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |