NONHSAT003165

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT003165

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

653 nt

Genomic location

chr1-:50864497..50865445

Exon number

2

Exons

50864497..50865022,50865319..50865445

Genome context

Sequence
000001 ATGGGCAAAG GAGATCCTAA GAAGCCAAGA GGCAAAATGT TATCATATGC ATTTCTTGTG AAAACTTGTC AGAAGGAGCA 000080
000081 TAAGAAGCTT CAGTCAACTT CTCAGAGTTT TCTAAGAAGT GCTCAGAaaa aaaGTGCTCA GTGAGGTGGA AGACCATATC 000160
000161 TGCTAAACAG AAAGGAAAAT CTGAAGATAT GGCAAAGGCA AACAAGGCCC GTTATGAAAG AGAAATGAAA ATCTATATCC 000240
000241 CCCCTAAAGG GGAGACAAAA AAGAAGTTCA AGTCCAATGC ACCCAAGTGG CCTCCTGCAG CCTGTTTCGT GTTCTGTTCT 000320
000321 GAGTGTTGCC CCAAATCAAA GAACATCTTG GCCTGTCCAT TGGTGATGTT GCAAAGAAAC TGGGAGACAT GTGGAATAGC 000400
000401 ACTGCTGCAG ATGACAAGCA GCCTTATGAA AAGACAGCTG TGAAGCTGAA GGAAAAATAC AAAAAGGATC TTGCTGCATA 000480
000481 TTGAACTAAA GGAAAGCCTG ATGCAGCAAA AAAGGGAGTC ATCAAGGCTG AAAAAAGCAa gaagaagaag gaaggggagg 000560
000561 aagatgaaga ggatcaggag gaggaggaag aTGAAGGTGA AGAAAATGAT GATGAATAAG TTGATTCTAG TGCAGTTTTT 000640
000641 TTTTCTTGTC TAA
[back to top]

Predicted Small Protein

Name NONHSAT003165_smProtein_188:442
Length 85
Molecular weight 9626.5447
Aromaticity 0.0833333333333
Instability index 61.6988095238
Isoelectric point 9.73333740234
Runs 14
Runs residual 0.0326812253564
Runs probability 0.0490826961416
Amino acid sequence MAKANKARYEREMKIYIPPKGETKKKFKSNAPKWPPAACFVFCSECCPKSKNILACPLVM
LQRNWETCGIALLQMTSSLMKRQL
Secondary structure LLHHHHHHHHHHHHEEELLLLLHHHHHHLLLLLLLLLEEEEELLLLLLLLLLEEELLHHH
HHLLHHHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -