NONHSAT003408
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003408 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1811 nt |
Genomic location |
chr1+:55681081..55683134 |
Exon number |
2 |
Exons |
55681081..55681423,55681674..55683134 |
Genome context |
|
Sequence |
000001 GCTCCCGGAA GCGGCACGGG AGGCGACCGT GCTCGCCGTT GGCAGGCTAG GGTTGGCGGC GGCGTATTCT GTTTGTTTTA 000080
000081 AACGAAGGAG CGGAGGGAGG GGCCGCGCCG CGGAGCGTGC CTAAGGTGAA AGGGCTGCCG TGCAGCCAGG CAGAGGCGAG 000160 000161 GAAGGCTTCT CCATCGTCGC CACCGCCCGC CTGTTTCGCC GGCAACAGGT TCCCCCGGGA CGGGAGGGGC CGCAGCGCCG 000240 000241 CGCAGCTCGC AGCGCTGAAC GTCGCCGAAA TCCCTTGGCC GGCCGAGCCT CCGCAGCCGC GACCCGGCTT CTCTCCGTCC 000320 000321 GAGTCCCCCG AGCCTCTCCG AACCCCCGCC AGCCCTTGCC GAAACCACCC TAAACCCGTT GAAATTAATT CCCAGCTGTC 000400 000401 CGAATTTTCC TTCCAACATT AACTGACTAC CTGTCTCCGC CAAGCTGACT GAACTCTACC GAACTCTTAC CCTGAAAGCC 000480 000481 CCTGAGAGTC CAAAATATAT TTTTCCAGCC CGAAATCTAA ATCCCAGTTC TCTGTATGAA AACCTCCAGA AACCCAGACT 000560 000561 CTTACTTCCT TCGGCCACGG ACTCGTTCGA ACATCGTGGA CATCACCTTC CCACTTTTTT ACCGCAGTCT TTGGCTCCGA 000640 000641 TTCTTTGTCC CTGCCTCTTG GGCAGCATCC TATCCCTGTT TCTTTCCACC TTTGAGGATT CCTCTACCTC TTTAAAGGCC 000720 000721 TGCTTTCTTT GCTTTCTCTT CTCACCTTTG GCATTGGCAC ACTGGGGTCA TATCTTTAGT TCCCTTGACT CCACCATCTA 000800 000801 AGCCAAGGGT GTCCAATCTT TTGGCTTCCC TGGGCTACAT TGGAAGGAGA AAAATTGTCT TGGACCACAT ATAAAATATT 000880 000881 CTAACGCTAA TGGTAGCTGA TGAAACTTTT AAAAAATCTC ATCATGTTTT AAGAAGTTTA CGAATTTGTG CTGAGCCGCA 000960 000961 TTCAAAGCCG TCCTGGGCCT AAGTCCTTGC TATTTTTCCT CTTCAATTTC CTTCAATCCA TAGTTCTCTA GGTTATTTTC 001040 001041 CCACCCTTTC CCAAGATTCG GATATCCCTT CATTCTTGCT GAGTTCATCT CCTATGCCTA TTCCTACATA CTTGCTGAGT 001120 001121 TCATCTTCTA ATGTCCTCAT CCTGGTTTCT TCCTGAACCT GAAATCCAGC TAACCTTACT TTTTCATCCC ATCAAACCCC 001200 001201 TGCTGTTGCC AGCCCAGCAC TCACGAAGAT CTTTACATAC ACCAAATATT AAATTAGGGC CGGTACCTAG ACATTGTCTC 001280 001281 TGCACTCTGC TGGCATATTT TCCCCTGGAC CACGAACCCT TCGTACCTAG TAACTTGCCA CCTGTGTTTA TAAATACCAG 001360 001361 CAATTTGATT TACAGGGTGA ATTTGTCACT ATTGTTTACT TTTAAATGAA GTTACTGTAT TTGTTGTTTC CATTAAAGGC 001440 001441 GACATTATAA AGCCTAGGCC TCATATCCAA AGCAAATAAA GTCTCAATTT TTTAATTAAA AGTAACAAAA GGAAACCTCA 001520 001521 CACTTCTGAA CAACAATGAC AAGAAGGAAT GCCTATAATT GGTTTGGGTC ACAATGTACA TATTGAAATA AAATTTTTAT 001600 001601 TAAGTATCAA CTTCCAGGTA CACAATGAAG TTTTAAATGT TTATCTGTGA CATATGAAGA ACAAAGCAAT CTAAACTGAT 001680 001681 GTAAGCAGGC TGTCATAAGG TACATGCTGA GGAATTTATT CAACAAATTG AATAAATTTA TTCAATAAAT AAATAATTAT 001760 001761 TCAATAAATA ATATATTTAA TAAATTTAAT AAATAGAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT003408_smProtein_1130:1408 |
Length | 93 |
Molecular weight | 10585.4184 |
Aromaticity | 0.108695652174 |
Instability index | 71.0434782609 |
Isoelectric point | 9.23675537109 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0382294058765 |
Amino acid sequence | MSSSWFLPEPEIQLTLLFHPIKPLLLPAQHSRRSLHTPNIKLGPVPRHCLCTLLAYFPLD HEPFVPSNLPPVFINTSNLIYRVNLSLLFTFK |
Secondary structure | LLLLLLLLLLHHHEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLL LLLLLLLLLLLEEEELLLEEEEELLEEEEEEL |
PRMN | - |
PiMo | - |