NONHSAT005342
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005342 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4050 nt |
Genomic location |
chr1-:114420790..114430081 |
Exon number |
2 |
Exons |
114420790..114424619,114429871..114430081 |
Genome context |
|
Sequence |
000001 GGGTGATTTA CCAGTGTTTT TAACTTCCTG CTGGGCTGAA AACTGCTTGT TTCGTGGAAA AGCAAAACTT GACAGCAAAC 000080
000081 ATCTAAAATG AAGAGCTCCC AAACTTTTGA GGAACAAACG GAATGCATTG TGAACACTCT ACTCATGGAC TTCTTGAGCC 000160 000161 CAACATTGCA GGTTGCCAGC CGGAACCTAT GCTGTGTAGA TGAAGTAGAT TCAGACAGGA GCTATACTCC AGAACACTGT 000240 000241 GGAATCTCTC AGCAAGACCT GGTGTGCTCA GGATTCCAGC TTAGCTTATG AGAGAGCTTT TCTGGCAGTG TCAGTGAAAC 000320 000321 TTCTTGAGTA CATGGCTCAC ATTGCTCCTG AAGTAGTGGG ACAGGTGGCT ATCCCCATGA CGGGTATGAT CAATGGGAAC 000400 000401 CAAGCCATCC GGGAGTTCAT CCAGGGCCAG GGAGGTTGGG TAAGTTTGTT GGGGCTCCTG GTTTTGCTAG GTATTTGCAC 000480 000481 TGTTTTTGTA CTGATACCTG GGATTCCAAT TCATGACCCT TTTTGTAAAT TGGAAACCAA CAGGAAAACA GGCTTCCCTA 000560 000561 TTTTGCTGAA AATGCCTAGA TTTTCTTGCC ATGGAAAAAT GGAGCAGACA GAAGCTCAGC CTGTGGATGT TGGACTCGAG 000640 000641 TCATGCTACC TTAAATATTG ACTGCTGACT ACTGTAAAGC TAATCTTCAT TTCCTACACA TAATCATCTA TAAAGTATAT 000720 000721 TCATGATAGA GTTCTAATTT CAGCCTGGCT TCACTCTGTT CCTTTGTAAA TTTCTGGGTC TTTTTTTCCT AACTTCTCTA 000800 000801 TGTGTGTGTT AGGGAAGTCA GAATCACCTT AATAGTATCT AAGAAAAAAC AGTCTTTGCT GTAGTGGTAA CTATATAAGG 000880 000881 TATTCTAAGC CCATGTTTTA GTAATCATCA GAACTTATGC TGTCATAGAG CACTCCTTTC CATTTACAGG GTCAGTGAAA 000960 000961 GCCTTAATAA GAGCTACATT TCCTGGAGCT ATCTGCAGAT CATTTCCTGG TTTCTTAGGA AGTTCCTGAA AGCAATTCCT 001040 001041 TTGACTGTAG GATTTTCTCT GTCTTCCCTA GGAAAATCTG GAGAGCTGAA GAGTTGGAGC TATTCACGAG ACTGAACATC 001120 001121 ACTTCCTTGT TGACTGATTG GGTGATTGAT TCCTGGGAAT TCAAACAAAC AAATAAAAAA GCACTTTTTT CATTTTATCA 001200 001201 GAACTGAACT TAGCTGAATA AGTTATTTTT TACTGATTGT TAAAGTTGGG AGCAGCTGCC AGAGGCCTGC AGAGTTGGTT 001280 001281 TTTGTTTTGT TTTGTTTTGT CAACTTAATG CAAACCACAG AGATTTTCTA CTTTCTGTTT TCACATGAGT TTTAATGAGG 001360 001361 TTCTGTTGAA GCAAAGACCC CTAGACACAA AGTAATGACT TGTTAGTAGT GGAATTATAA GCAACAGGGC AGGCCTTTGC 001440 001441 TGGAGGTATT TTGAGAGAAA GGGAGAACAA TGGAAACTAT TTCTTCAGAT GTAGCCCTGT CTTTTGGTAA GAATTGTGCC 001520 001521 TACTAATTTT GCAATTTAAA GGATTTCAGG AAGCTTTTTG GTTGAAAAAT CTTGTTTTTT TTTTTTTTAG ACGTAGTCTC 001600 001601 ACTCTGCCAC CCAGGCTGGA GTGCAGTGGT GCGATCTCGG CTCACTGCAA GCTCCGCCTC CCGGTTTCAC TCCATTCTCC 001680 001681 TGCCTCAGCC TCCTGAGTGG CTGGGACTGC AGGGGCCCGC CATCACGCCC GGCTAATTTT TTGTATTTTT AGTAGAGATG 001760 001761 GGGTTTCGCC GTGTTGGCCA GGATGGTCTG GATCTCCTGA CCTCGTGATT CGCCCGCCTT GGCCTCCCAA AGTGCTGGGA 001840 001841 TTACAGGCGT GAGCCACCTC GCCCGGCCTA AAATCTTGTT ATTTTAAGTT GAGCATTTTC ATTCAAAATC ATCCCTAAAC 001920 001921 TTCATGTTAA TTTCACCTGA GAAGGACTAT TTTATGCATT TTAGAGGTTG GAAGCAAAAA ACAAACAAAC AAACAAAAAC 002000 002001 AGTTGTTTCT ACTAGGAAGG TCAAAGAAAA TAAAAGTTAC TCCATTTTTA CTGCCACAGG ATGCAGGAAG TGCTGGCCCA 002080 002081 CATCTAGGAC AGCAAGGCCA CCCCAGCTTA GATGAAGCTA GCTGCATAAC ACAAAGCTTT AAAAGTGTGG TTCACACACC 002160 002161 ACTTGTGGAC CTTATTGAAT TGCTGATTCG CATTCCTAGA GATTCTGATT CTGTAGGGGT AGGCTGGAGC CTAGGAACCT 002240 002241 ACCTTTTAAA CTAGTTCCAT AGGTGATTCT GATGTACATA TAGAGTGTGA CAGCCATCAC TATAGAGAAT AGATTGATAA 002320 002321 ATTACAACCC ACGCGTCAAA TCTGGCTTGC TGTCTTATTT TGTAAATAAA GTTTTATTGG AATAGAGCAA CATTCACTTG 002400 002401 TTTACATATT GTCCATGGCC GCTTTTGTGC TACAATGGCA GAGTTGAATG ATTATAGAAG ACCATACGGC TGGTTAAGTC 002480 002481 CAAAATATTT ACTAGCTGGC CCTTTACAGA AAAAGTTGGC TGACCCCTTC TCTAAATCAA CATTTCTCCT TGGTAACTGA 002560 002561 AACTCTATTA CAGTCCTGAC AATTCCAGCA AACACAGCTG TAGATAGGGT TTAAACTCAA AGATATTTAA CTCTTCTTTG 002640 002641 GGAACTTAGT CTCCATATGT TTGTTAGTTC TTGCATAATC CACAGTTTCT CTGGGTCTTC AGCCAATCAG AGAGCTCTGT 002720 002721 AGCTCCTGAG TAGTCCATTT CTCTGGCCCT ACAAGTGAGA GTGATTGGAA GCAAAGCTTA TGATTTGTAT GATCTTGTAT 002800 002801 CTCAAAATAG TCCTTAATGA TCTAATAGAT TAGTAGGCAG TCATCAGGTA GAGACTCCAA AAACCAGACT ACTTTCCTAA 002880 002881 ATATCAAGAA GAAAGGCATT GCTACAGTGA TTCATGAAAA GCAGCATTAA TAACTTTGGC TAAAGTTTAA CAAAGCTAAC 002960 002961 CACTTCCCCT CTATCAGCCA GCCATCTATG TATCTCCTCT AAATGCAGAG AAGTAAATAT GTAGTGCTGT TAATACATTT 003040 003041 TTGCTTTTTA AAGTTATGCT TTGTCCTGGC GCAGTGGCTC ATGCCTGTAA TCCCAGCACT TTGGGAGGCC AAGGCGGGTG 003120 003121 GATCACCTGA GGTTAGGAGT TTGAGACCAG CCTGGCCAAC ATGGTGAAGC CCTGTCTCTG CTGGGGATGC AGAAGATTAG 003200 003201 CCGGGCTTGG TGGCGCGTGC CTGTGGTGCC GGCTGCTCAG GAGGCTGAGG CAGGAGAATC ACTTGAACCT GGGAGGCGGA 003280 003281 GGTTGCTGTG AGCTGAGTTC GCGCCATTGC ACTCCAGCCT GGGCTACAAA AGCGAAGCTG TCTAAAAAAA AAAAAAGAAA 003360 003361 ATAAATAAAG TTATGCTTTT TCCTCTATTC CTAGTTAAAT CACAACAAGT TAGTAATCCA TAAATGATGT GTCCTGTTTC 003440 003441 TCTTTAGTAG AAATTATATT TTTGGCTACC AGTTAAGAAA CTTGTACTCC TTTGTCCCTT ATGTTACTAT AAACTCAAGA 003520 003521 TGATGAGTTT TGTGGTATTT GACTTCATAG GCAAAATCAA AATTTTTACT TTGTTGCTAT TCTGTTTTAT GAAATAAACT 003600 003601 TCTGTCTATG CATTTGAACT AAGTTTCAGC AAATTCAATC TAAATTGAAT AATTCCAGCT CCCAGTTTTA TCCTATGTTG 003680 003681 CTCATAAAAC AGTTCCAAGT ATACTGCATT ATCTTGAGAT TTGAAGATAT GGTGCCCACG GGGATTATAC TAGGCAAATG 003760 003761 CGTTAAGCAG CTCTGGCCTA GGTGTTGTGT ATTTTAAGAG ACTCTATCTT AGGAGAGCTT AAGTGATTGG GCTGCAGGAA 003840 003841 GAAGACATTG TAACCCAGGA ATTAAAAATG GATTCAGATT GCCTGATTTT AACACTTTAG TTTCACCATA GGCTAATTAT 003920 003921 GTGACATTGG GCAAGAGACA TAATTCTTCT GTACCTTAGT TTCTACATTT GTAAAATAGA GATGATTTGG TAACTTATTA 004000 004001 ATAAGATTTT TGTGAGAGAT AAATAAAACA AATACATTTT GTAAAAAAAA |
Predicted Small Protein
Name | NONHSAT005342_smProtein_3002:3166 |
Length | 55 |
Molecular weight | 6285.5619 |
Aromaticity | 0.148148148148 |
Instability index | 64.8777777778 |
Isoelectric point | 9.69427490234 |
Runs | 4 |
Runs residual | 0.0886178861789 |
Runs probability | 0.0362789259849 |
Amino acid sequence | MQRSKYVVLLIHFCFLKLCFVLAQWLMPVIPALWEAKAGGSPEVRSLRPAWPTW |
Secondary structure | LLLLLEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooooooo |